#============================================================* # test simulation using ball joints * # * # two bodies with 4 residues each. * #============================================================* # set units units units scale name = mass uname = reducedMass value = 10000.0 # open pdb file database open name = neck format = pdb file = ../data/neck_xform.pdb # read molecule molecule read name = m1 database = neck molecule m1 xform rotation = [ 45 15 -60 ] # create a some domains domain create d1 = C[760-788]A domain d1 backbone color = [ 0.7 0 0 ] width = 3 show domain create d2 = C[788-815]B domain d2 backbone color = [ 0 0.7 0 ] width = 3 show graphics background color = [ 1 1 1 ]