#============================================================* # test simulation using ball joints * # * # two bodies with 4 residues each. * #============================================================* # set units units units scale name = mass uname = reducedMass value = 10000.0 # open pdb file database open name = neck format = pdb file = ../data/neck_xform.pdb # read molecule molecule read name = m1 database = neck molecule m1 xform rotation = [ 45 15 -60 ] # create a some domains domain create helix = C[760-815] domain helix atoms color = element show domain create camA = A domain camA atoms color = element show domain create camB = B domain camB atoms color = element show graphics background color = [ 1 1 1 ] graphics scale = 2.5