#============================================================*
#               test simulation using ball joints            *
#                                                            *
# two bodies with 4 residues each.                           *
#============================================================*

# set units
units
units scale  name = mass   uname = reducedMass   value = 10000.0

# open pdb file
database open name = neck format = pdb  file = ../data/neck_xform.pdb

# read molecule
molecule read  name = m1   database = neck
molecule m1  xform  rotation = [ 45  15  -60 ]

# create a some domains
domain create helix = C[760-815]
#domain helix backbone color = [ 0.0 0.0 0.7 ] width = 3 show
domain helix bonds  atom_color = [ 0 0 0.7 ] bond_color = [ 0 0 1 ] \
                    atoms = true show = true

domain create camA = A
domain camA bonds  atom_color = [ 0.7 0 0 ] bond_color = [ 1 0 0 ] \
                   atoms = true show = true

domain create camB = B
domain camB bonds  atom_color = [ 0 0.7 0 ] bond_color = [ 0 1 0 ] \
                   atoms = true show = true

graphics background color = [ 1 1 1 ]