#============================================================*
#               output pdb                                   *
#============================================================*

# set units
units
units scale  name = mass   uname = reducedMass   value = 10000.0

# open pdb file
database open name = neck format = pdb  file = ../../data/neck_xform.pdb

# read molecule
molecule read  name = m1   database = neck
molecule m1  xform  rotation = [ 45  15  -60 ]

# create a some domains
domain create helix = C[760-815]
domain helix backbone color = [ 0.0 0.0 0.7 ] width = 3 show

domain create camA = A
domain camA backbone color = [ 0.7 0 0 ] width = 3 show

domain create camB = B
domain camB backbone color = [ 0 0.7 0 ] width = 3 show

domains write atoms list = { helix camA camB }  file = t.pdb

graphics background color = [ 1 1 1 ]