#============================================================*
#               test domain fitting                          *
#============================================================*

# open pdb file
#---------------
database open name = neck format = pdb  file = neck_xform.pdb

# read molecule
molecule read  name = m1   database = neck

# create a some domains
#----------------------
domain create iq1 = AC[760-788]
domain iq1 backbone color = [ 1 0 0 ] width = 2 show
#domain iq1 atoms color = [ 1 0 0 ] width = 2 show

domain create iq2 = BC[788-814]
domain iq2 backbone color = [ 0 1 0 ] width = 2 show
#domain iq2 atoms color = [ 1 0 0 ] width = 2 show

domain create iq3 = DC[814-836]
domain iq3 backbone color = [ 0 0 1 ] width = 2 show
#domain iq3 atoms color = [ 1 0 0 ] width = 2 show

domain create hc = C


# fit iq1 to iq2
#---------------

#domain iq1 fit  sequence = C[770-780]               \
                destination = iq2                   \
                destination_sequence = C[798-808]   \
                atom_names = { O C CA }             \
                rotation = on

domain iq1 fit  sequence = C[773-776]               \
                destination = iq2                   \
                destination_sequence = C[796-799]   \
                atom_names = { CA }                 \
                rotation = on

domain iq1 backbone name = fit color = [ 1 1 1 ] width = 3 show