#============================================================*
#               test domain fitting and joining              *
#                                                            *
# using several residues.                                    *
#============================================================*

# open pdb file
#--------------
database open name = neck format = pdb  file = ../data/neck_xform.pdb

# read molecule
#--------------
molecule read  name = m1   database = neck

# create a some domains
#----------------------
domain create iq1 = C[760-788]
domain iq1 bonds  bond_color = [ 1 0 0 ] show

domain create iq3 = C[814-836]
domain iq3 backbone color = [ 0 0 1 ] width = 1 show


# fit iq3 to iq1
#---------------
domain iq3 fit  sequence = C[821-823]               \
                destination = iq1                   \
                destination_sequence = C[773-775]   \
                atom_names = { O C CA }         
domain iq3 bonds name = fit color = [ 1 1 1 ] width = 2 show
domain iq3 backbone name = fit color = [ 0 1 0 ] width = 1 show


# joint iq3 to iq1
#-----------------
domain iq3  join  name = iq13          \
                  residue = C[821]     \
                  destination = iq1    \
                  destination_residue = C[773]

domains write atoms list = { iq13 }  file = t1.pdb

domain iq13 backbone color = [ 1 1 0 ] width = 4 show

graphics  center  domain = iq1