#============================================================*
#               test simulation of peptide planes            *
#                                                            *
# use pin joints.                                            *
#============================================================*

# set units
units
units scale  name = mass   uname = reducedMass   value = 10000.0

# set units
units
units scale  name = mass   uname = reducedMass   value = 10000.0

database open name = db1  format = pdb  file = d1.pdb
molecule read  name = m1   database = db1
domain create d1 = A
domain d1 xform  translation = [ -7.0453  -3.6504 1.0206 ]
domain d1 bonds  atoms = true  atom_color = [ 1 0 0 ] \
                 render = line \
                 bond_color = [ 1 0 0 ] width = 3 show

database open name = db2  format = pdb  file = d2.pdb
molecule read  name = m2   database = db2
domain create d2 = A
domain d2 xform  translation = [ -7.0453  -3.6504 1.0206 ]
domain d2 bonds  atoms = true  atom_color = [ 0 1 0 ] \
                 bond_color = [ 0 1 0 ] width = 3 show

database open name = db3  format = pdb  file = d3.pdb
molecule read  name = m3   database = db3
domain create d3 = A
domain d3 xform  translation = [ -7.0453  -3.6504 1.0206 ]
domain d3 bonds  atoms = true  atom_color = [ 0 1 1 ] \
                 render = line \
                 bond_color = [ 0 1 1 ] width = 3 show


domains write list = { d1 } chains = { A } file = d1x.pdb
domains write list = { d2 } chains = { A } file = d2x.pdb
domains write list = { d3 } chains = { A } file = d3x.pdb