#============================================================*
#               test simulation of peptide planes            *
#                                                            *
# look at model of two residues.                             *
#============================================================*

# set units
units
units scale  name = mass   uname = reducedMass   value = 10000.0

# set units
units
units scale  name = mass   uname = reducedMass   value = 10000.0

database open name = db1  format = pdb  file = d1.pdb
molecule read  name = m1   database = db1
domain create d1 = A
domain d1 xform  translation = [ 0.2 0 0 ] 
domain d1 bonds  atoms = true  atom_color = [ 1 0 0 ] \
                 display = line \
                 bond_color = [ 1 0 0 ] width = 3 show

database open name = db2  format = pdb  file = d2.pdb
molecule read  name = m2   database = db2
domain create d2 = A
domain d2 xform  translation = [ 0 0.2 0 ] 
#domain d2 bonds  atoms = true  atom_color = [ 0 1 0 ] \
                 bond_color = [ 0 1 0 ] width = 3 show
domain d2 bonds  atoms = true  atom_color = element \
                 bond_color = [ 0 1 0 ] width = 3 show

database open name = db3  format = pdb  file = d3.pdb
molecule read  name = m3   database = db3
domain create d3 = A
domain d3 bonds  atoms = true  atom_color = [ 0 1 1 ] \
                 bond_color = [ 0 1 1 ] width = 3 show


graphics center point = [ 7.32988 3.85811 -0.972 ]