#============================================================# # test visulaization of peptide planes. # #============================================================# system echo = off system verbose = false # set units #---------- #units units scale name = mass uname = reducedMass value = 10000.0 # open pdb file #-------------- database open name = db1 format = pdb file = ../data/neck_xform.pdb # read molecule #-------------- molecule read name = m1 database = db1 # create domains #--------------- domain create iq1 = C[766-783] domain iq1 backbone color = [ 1 0.61 0 ] planes = true width = 2 show domain iq1 bonds atom_color = element bond_color = element \ render = solid atoms = true show = true graphics center point = [ 0.84452 1.38638 1.2856 ]