#============================================================*
#                      read nag-nam                          *
#============================================================*

# set units
units
units scale  name = mass   uname = reducedMass   value = 10000.0

#----------- nag-nam -------------
database open name = nag-nam  format = pdb  file = nag-nam.pdb  data = miscellaneous 
molecule read  name = m1 database = nag-nam type = miscellaneous 
domain create nag-nam = A
#domain nag-nam atoms color = [ 1 1 1 ] width = 2 show
#domain nag-nam bonds  atom_color = [ 1 0 0 ] show = true
#domain nag-nam bonds  atoms = true  bond_color = [ 1 0 0 ] show = true
#domain nag-nam bonds  bond_color = [ 1 0 0 ] atoms = true show = true
#domain nag-nam bonds  bond_color = element atoms = true show = true
domain nag-nam bonds  bond_color = element atoms = true atom_color = [ 0 1 0 ] show = true


#----------- peptide 1 -------------
database open name = pep1  format = pdb  file = peptide_1.pdb  data = miscellaneous 
molecule read  name = m2 database = pep1 type = miscellaneous 
domain create pep1 = A
#domain pep1 atoms color = [ 1 0 0 ] width = 2  display = line show
#domain pep1  bonds  bond_color = [ 1 0 0 ] show = true
domain pep1  bonds  bond_color = [ 1 0 0 ] atoms = true show = true

#----------- peptide 2 -------------
database open name = pep2  format = pdb  file = peptide_2.pdb  data = miscellaneous 
molecule read  name = m3 database = pep2 type = miscellaneous 
domain create pep2 = A
#domain pep2 atoms color = [ 0 1 0 ] width = 2  display = line show
domain pep2  bonds  bond_color = [ 0 1 0 ] atoms = true show = true