#============================================================*
#               test fitting peptide-glycans                 *
#============================================================*

# set units
units
units scale  name = mass   uname = reducedMass   value = 10000.0

# open pdb file
database open name = dh138  format = pdb  file = dh138_conf1.pdb

# read molecule
molecule read  name = m1  database = dh138

# create a some domains
domain create d1 = A
domain d1 bonds  bond_color = element  show = true

domain create d2 = A
#domain d2 bonds  atom_color = element  show = true

domain d2  fit  sequence = A[1]                              \
                atom_names = { C259 N227 C219 }              \
                destination = d1                             \
                destination_sequence = A[1]                  \
                destination_atom_names = { C120 C117 N116 }  \
                rotation = on                                \
                copy = d2Fit  

#domain create d2Fit = A
#domain d2Fit  xform  translation = [ 10 0 0 ] 
domain d2Fit  bonds  bond_color = [ 1 1 0 ] atoms = true show = true