#============================================================#
#               test reading 2nd structure                   #
#                                                            #
# show topology.                                             #
#============================================================#

# set units
units
units scale  name = mass   uname = reducedMass   value = 10000.0

# open pdb file
#--------------
database open name = db1  format = pdb  file = ../data/2IX7.pdb


# read molecule
#--------------
molecule read  name = m1   database = db1  

# create a some domains
#----------------------
domain create cam = A
domain cam backbone color = [ 1 0 0 ] width = 1 show
#domain cam bonds atoms = true atom_color = element color = [ 1 0 0 ] width = 1 show

# show contact
#-------------
#domain cam contact cutoff = 0.01 use_sidechains = true   use_radii = true
domain cam contact cutoff = 0.5 atom_nams = { CA } show
#domain cam contact cutoff = 0.5 show


#graphics background color = [ 1 1 1 ]