#============================================================# # test reading 2nd structure # # # # show topology. # #============================================================# # set units units units scale name = mass uname = reducedMass value = 10000.0 # open pdb file #-------------- database open name = db1 format = pdb file = ../data/1W7I.pdb # read molecule #-------------- molecule read name = m1 database = db1 # create a some domains #---------------------- #domain create head = A[2-20] domain create head = A[2-780] domain head backbone color = [ 0.6 0 0 ] width = 3 show # show contact #------------- domain head contact cutoff = 1.0 use_sidechains = true show #graphics background color = [ 1 1 1 ]