#============================================================* # test reading 2nd structure * # * # create domains from all helices, sheets and loops. * #============================================================* # set units units units scale name = mass uname = reducedMass value = 10000.0 # open pdb file database open name = db1 format = pdb file = 1W7I.pdb # read molecule molecule read name = m1 database = db1 # create a some domains domain create head = A[2-780] #domain head backbone color = [ 0.6 0.6 0.6 ] width = 1 show domain create cam = B #domain cam backbone color = [ 0.6 0.6 0.6 ] width = 1 show # show all helices #----------------- domains create helices = true prefix = h color = [ 0.7 0 0 ] \ width = 5 # show all sheets #---------------- domains create sheets = true prefix = sh color = [ 0 0.7 0 ] \ width = 8 # show all loops #---------------- domains create loops = true prefix = lp color = [ 0 0 0.7 ] \ width = 8 graphics background color = [ 1 1 1 ]