#============================================================*
#               test reading 2nd structure                   *
#                                                            *
# create domains from all secondary structure.               *
#============================================================*

# set units
units
units scale  name = mass   uname = reducedMass   value = 10000.0

# open pdb file
database open name = db1  format = pdb  file = ../data/2IX7.pdb

# read molecule
molecule read  name = m1   database = db1  

# create a some domains
domain create head = A[2-780]
domain head backbone color = [ 0 0 0 ] width = 1 show
domain create cam = B
domain cam backbone color = [ 0 0 0 ] width = 1 show

# show all helices
#-----------------
domains  create  helices = true  prefix = h color = [ 1 0 0 ] width = 5

# show all sheets 
#----------------
domains  create  sheets = true  prefix = sh color = [ 0 1 0 ] width = 8

# show all loops  
#----------------
domains  create  loops = true  prefix = lp color = [ 0 0 1 ]  width = 8

graphics background color = [ 1 1 1 ]