#============================================================*
#                  test variables                            *
#============================================================*

#system echo = off
#system verbose = false


# set units
#----------
units
units scale  name = mass   uname = reducedMass   value = 10000.0


# open pdb file
#--------------
database open name =  neck_xform  format = pdb file =  ../data/neck_xform.pdb


# read molecule
#--------------
molecule read  database =  neck_xform  name = m1  model = 1  type = protein
molecule m1 xform  rotation = [ 90  0 0 ]


# define string variable
#-----------------------
variable  iq2 = BC[788-814]
variable  red = [ 1 0 0 ]
variable  green = [ 0 1 0 ]
variable  iq1 = A
variable  width = 4.0


# create domains
#---------------
#domain create iq2 = BC[788-814]
domain create iq2 = ${iq2}
domain iq2 backbone  color = ${red}  width = 2 show

domain create iq1 = ${iq1} 
domain iq1  backbone  color = ${green}  width = ${width} show