#============================================================*
#                  test variables                            *
#                                                            *
# pass a variable "rot" as a command line argument.          *
#============================================================*

#system echo = off
#system verbose = false


# set units
#----------
units
units scale  name = mass   uname = reducedMass   value = 10000.0


# open pdb file
#--------------
database open name =  neck_xform  format = pdb file =  ../data/neck_xform.pdb


# read molecule
#--------------
molecule read  database =  neck_xform  name = m1  model = 1  type = protein
molecule m1 xform  rotation = ${rot}


# create domains
#---------------
domain create iq2 = BC[788-814]
domain iq2 backbone  color = [ 1 0 0]  width = 2 show