ROOT = /netapp/home/dkeedy/qFit
CLPR = ${ROOT}/clipper-2.1
#CCPX = ${CLPR}/ccp4-onlylibs-dev
MMDB = ${ROOT}/mmdb-1.23.2.2
FFTW = ${ROOT}/fftw-2.1.5

CDIR = .

ICLPR = ${CLPR}
LCLPR = ${CLPR}/lib
#ICCPX = ${CCPX}/include
#LCCPX = ${CCPX}/lib
#ISSM = ${CCPX}/lib/ssm
#LSSM = ${CCPX}/lib
IMMDB = ${MMDB}/include
LMMDB = ${MMDB}/lib
IFFTW = ${FFTW}/include
LFFTW = ${FFTW}/lib
ICDIR = ${CDIR}/src
LCDIR = ${CDIR}/lib
BCDIR = ${CDIR}/bin
TDIR = ${CDIR}/tmp

# Options for various setting
#INC_DIRS = -I${ICLPR} -I${ICCPX} -I${ISSM} -I${ICDIR}
#LIB_DIRS = -L${LCCPX} -L${LCLPR} -L${LFORT} -L${LSSM} 
INC_DIRS = -I${ICLPR} -I${IMMDB} -I${IFFTW} -I${ICDIR} 
LIB_DIRS = -L${LCLPR} -L${LMMDB} -L${LFFTW}

OBJS = ${TDIR}/CRankFrags.o ${TDIR}/main.o

COMPILER = g++
#CFLAGS = -O3 -march=pentium4 -fomit-frame-pointer -funroll-loops -mfpmath=sse -msse2 # on P4 sse implies sse2
#CFLAGS = -g # on P4 sse implies sse2
CFLAGS = -g -O2 -msse2 -DMATH_DOUBLE

CC = ${COMPILER} ${CFLAGS} ${INC_DIRS}

${TDIR}/main.o : ${ICDIR}/main.cpp
	${CC} -c -fPIC -o $@ ${ICDIR}/main.cpp

${TDIR}/CRankFrags.o : ${ICDIR}/CRankFrags.cpp
	${CC} -c -fPIC -o $@ ${ICDIR}/CRankFrags.cpp

CombineFrags : ${OBJS}
	#${CC} ${LIB_DIRS} -o ${BCDIR}/$@ ${OBJS} -lclipper-mmdb -lmmdb -lclipper-ccp4 -lccp4c -lclipper-contrib -lclipper-phs -lclipper-core -lrfftw -lfftw -lmmdb
	${CC} ${LIB_DIRS} -o ${BCDIR}/$@ ${OBJS} -lclipper-mmdb -lmmdb -lclipper-ccp4 -lclipper-contrib -lclipper-phs -lclipper-core -lrfftw -lfftw -lmmdb