\section{Sim\-TK molecular structure API Class List}
Here are the classes, structs, unions and interfaces with brief descriptions:\begin{CompactList}
\item\contentsline{section}{{\bf org::simtk::molecularstructure::Atom} }{\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_atom}}{}
\item\contentsline{section}{{\bf org::simtk::molecularstructure::Biopolymer} (A macromolecular heteropolymer, such as protein or {\bf DNA}{\rm (p.\,\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_d_n_a})} )}{\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_biopolymer}}{}
\item\contentsline{section}{{\bf org::simtk::molecularstructure::Chemical\-Element} }{\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_chemical_element}}{}
\item\contentsline{section}{{\bf org::simtk::molecularstructure::DNA} }{\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_d_n_a}}{}
\item\contentsline{section}{{\bf org::simtk::molecularstructure::Molecular\-Assembly} (A collection of one or more molecules, as might be found in a PDB file )}{\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_molecular_assembly}}{}
\item\contentsline{section}{{\bf org::simtk::molecularstructure::Molecule} (A single molecule structure )}{\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_molecule}}{}
\item\contentsline{section}{{\bf org::simtk::molecularstructure::Nucleic\-Acid} (A single molecule of {\bf DNA}{\rm (p.\,\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_d_n_a})} or {\bf RNA}{\rm (p.\,\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_r_n_a})} )}{\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_nucleic_acid}}{}
\item\contentsline{section}{{\bf org::simtk::molecularstructure::PDBAtom} (A chemical atom with members found in {\bf Protein}{\rm (p.\,\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_protein})} Data Bank flat structure files )}{\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_p_d_b_atom}}{}
\item\contentsline{section}{{\bf org::simtk::molecularstructure::Protein} }{\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_protein}}{}
\item\contentsline{section}{{\bf org::simtk::molecularstructure::RNA} (A single molecule of ribonucleic acid ({\bf RNA}{\rm (p.\,\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_r_n_a})}) )}{\pageref{classorg_1_1simtk_1_1molecularstructure_1_1_r_n_a}}{}
\end{CompactList}
