PDB data file name: 1x8w.pdb2 BEGIN_base-pair 1_182, B: 96 G-C 278 B: +/+ cis XIX 1_183, B: 96 G-G 279 B: stacked 2_182, B: 97 A-C 278 B: stacked 2_204, B: 97 A-U 300 B: H/W cis XXIII 3_180, B: 98 C-G 276 B: +/+ cis XIX 4_179, B: 99 C-G 275 B: W/W cis n/a 4_180, B: 99 C-G 276 B: stacked 5_178, B: 100 G-C 274 B: +/+ cis XIX 6_177, B: 101 U-U 273 B: W/W cis XVI 7_176, B: 102 C-G 272 B: +/+ cis XIX 10_161, B: 105 A-G 257 B: S/S tran n/a 12_13, B: 107 U-G 108 B: stacked 12_119, B: 107 U-A 214 B: -/- cis XX 13_118, B: 108 G-C 213 B: +/+ cis XIX 14_117, B: 109 C-G 212 B: +/+ cis XIX 15_116, B: 110 G-C 211 B: +/+ cis XIX 16_114, B: 111 G-C 209 B: +/+ cis XIX 17_113, B: 112 G-C 208 B: +/+ cis XIX 17_114, B: 112 G-C 209 B: stacked 19_20, B: 114 A-A 115 B: stacked 20_110, B: 115 A-U 205 B: W/W cis n/a 21_110, B: 116 G-U 205 B: W/W cis XXVIII 22_109, B: 117 G-C 204 B: W/W cis n/a 23_108, B: 118 G-C 203 B: +/+ cis XIX 24_25, B: 119 G-U 120 B: stacked 24_107, B: 119 G-U 202 B: W/W cis XXVIII 24_229, B: 119 G-A 325 B: S/S cis n/a 25_106, B: 120 U-G 201 B: W/W cis XXVIII 26_28, B: 121 C-A 123 B: S/S cis n/a 26_105, B: 121 C-G 200 B: +/+ cis XIX 26_106, B: 121 C-G 201 B: stacked 28_102, B: 123 A-C 197 B: H/W tran XXV 29_30, B: 124 C-A 125 B: S/W cis syn n/a 31_101, B: 126 G-A 196 B: W/W cis VIII 32_100, B: 127 C-G 195 B: +/+ cis XIX 33_99, B: 128 C-G 194 B: +/+ cis XIX 34_98, B: 129 G-C 193 B: +/+ cis XIX 36_97, B: 131 U-A 192 B: -/- cis XX 37_96, B: 132 C-G 191 B: +/+ cis XIX 38_95, B: 133 A-U 190 B: -/- cis XX 39_94, B: 134 G-C 189 B: +/+ cis XIX 41_87, B: 136 A-U 182 B: -/- cis XX 42_86, B: 137 C-G 181 B: +/+ cis XIX 43_83, B: 138 C-A 178 B: stacked 43_85, B: 138 C-G 180 B: +/+ cis XIX 45_68, B: 140 A-G 163 B: H/S tran XI 46_67, B: 141 G-U 162 B: W/W cis XXVIII 47_66, B: 142 U-A 161 B: -/- cis XX 48_65, B: 143 C-G 160 B: +/+ cis XIX 49_64, B: 144 U-A 159 B: -/- cis XX 50_63, B: 145 C-G 158 B: +/+ cis XIX 51_62, B: 146 A-U 157 B: -/- cis XX 52_61, B: 147 G-U 156 B: W/W cis XXVIII 53_60, B: 148 G-U 155 B: W/W cis XXVIII 54_59, B: 149 G-C 154 B: +/+ cis XIX 58_154, B: 153 A-G 250 B: S/S tran n/a 62_63, B: 157 U-G 158 B: stacked 70_80, B: 165 C-G 175 B: +/+ cis XIX 71_72, B: 166 C-U 167 B: stacked 71_79, B: 166 C-G 174 B: +/+ cis XIX 71_80, B: 166 C-G 175 B: stacked 72_79, B: 167 U-G 174 B: W/W tran XXVII 81_82, B: 176 G-U 177 B: stacked 86_91, B: 181 G-A 186 B: S/S tran n/a 88_89, B: 183 A-A 184 B: stacked 89_117, B: 184 A-G 212 B: S/S tran n/a 109_110, B: 204 C-U 205 B: stacked 118_119, B: 213 C-A 214 B: stacked 120_162, B: 215 G-U 258 B: W/W cis XXVIII 121_161, B: 216 C-G 257 B: +/+ cis XIX 122_159, B: 217 C-C 255 B: W/H tran n/a 123_124, B: 218 A-A 219 B: stacked 125_157, B: 220 G-U 253 B: W/W cis XXVIII 126_127, B: 221 U-C 222 B: stacked 126_156, B: 221 U-A 252 B: -/- cis XX 127_155, B: 222 C-G 251 B: W/W cis n/a 127_156, B: 222 C-A 252 B: W/W cis n/a 128_154, B: 223 C-G 250 B: +/+ cis XIX 129_130, B: 224 U-A 225 B: stacked 129_152, B: 224 U-A 248 B: W/H tran XXIV 132_150, B: 227 G-A 246 B: W/W cis VIII 132_151, B: 227 G-U 247 B: W/W cis XXVIII 133_150, B: 228 U-A 246 B: -/- cis XX 134_135, B: 229 C-A 230 B: stacked 134_149, B: 229 C-G 245 B: +/+ cis XIX 135_148, B: 230 A-U 244 B: -/- cis XX 136_147, B: 231 A-U 243 B: -/- cis XX 136_148, B: 231 A-U 244 B: stacked 137_146, B: 232 C-G 242 B: +/+ cis XIX 138_145, B: 233 A-U 241 B: -/- cis XX 139_140, B: 234 G-G 235 B: stacked 139_144, B: 234 G-C 240 B: +/+ cis XIX 141_142, B: 236 A-G 237 B: stacked 159_161, B: 255 C-G 257 B: stacked 165_169, B: 261 A-A 265 B: W/H tran V 166_216, B: 262 C-G 312 B: +/+ cis XIX 167_216, B: 263 A-G 312 B: H/S tran XI 168_169, B: 264 G-A 265 B: stacked 168_215, B: 264 G-C 311 B: +/+ cis XIX 168_247, B: 264 G-G 414 B: H/W cis VI 169_214, B: 265 A-U 310 B: -/- cis XX 170_210, B: 266 C-A 306 B: H/H tran syn n/a 170_213, B: 266 C-G 309 B: +/+ cis XIX 171_212, B: 267 U-A 308 B: -/- cis XX 172_211, B: 268 A-U 307 B: -/- cis XX 174_208, B: 270 A-G 304 B: W/S cis n/a 180_181, B: 276 G-C 277 B: stacked 183_203, B: 279 G-A 299 B: W/W cis VIII 184_202, B: 280 G-C 298 B: +/+ cis XIX 185_201, B: 281 G-U 297 B: W/W cis XXVIII 186_200, B: 282 G-C 296 B: +/+ cis XIX 187_188, B: 283 A-A 284 B: stacked 187_199, B: 283 A-U 295 B: -/- cis XX 188_198, B: 284 A-U 294 B: -/- cis XX 188_199, B: 284 A-U 295 B: stacked 189_197, B: 285 G-C 293 B: +/+ cis XIX 214_215, B: 310 U-C 311 B: stacked 216_217, B: 312 G-G 313 B: stacked 217_246, B: 313 G-C 413 B: +/+ cis XIX 219_239, B: 315 C-G 406 B: +/+ cis XIX 220_238, B: 316 C-G 405 B: +/+ cis XIX 221_237, B: 317 U-U 404 B: W/W cis XVI 222_223, B: 318 C-U 319 B: stacked 222_235, B: 318 C-G 331 B: +/+ cis XIX 222_236, B: 318 C-U 403 B: stacked 223_234, B: 319 U-A 330 B: -/- cis XX 224_233, B: 320 C-G 329 B: +/+ cis XIX 225_232, B: 321 C-G 328 B: +/+ cis XIX 225_233, B: 321 C-G 329 B: stacked 226_231, B: 322 C-G 327 B: +/+ cis XIX 227_230, B: 323 G-A 326 B: S/H tran XI 229_230, B: 325 A-A 326 B: stacked 236_237, B: 403 U-U 404 B: stacked 241_242, B: 408 G-U 409 B: stacked 242_243, B: 409 U-A 410 B: stacked 3_204, B: 98 C-U 300 B: W/W cis !1H(b_b) 28_105, B: 123 A-G 200 B: W/. tran !1H(b_b). 40_92, B: 135 U-A 187 B: W/H cis !1H(b_b) 54_58, B: 149 G-A 153 B: ./H tran !1H(b_b) 57_152, B: 152 A-A 248 B: W/W tran !1H(b_b). 73_93, B: 168 U-G 188 B: H/W tran syn !1H(b_b). 126_157, B: 221 U-U 253 B: W/W cis !1H(b_b) 173_211, B: 269 G-U 307 B: W/W cis !1H(b_b). 13_163, B: 108 G-A 259 B: H/S cis !(b_s) 15_88, B: 110 G-A 183 B: S/S cis !(b_s) 25_228, B: 120 U-A 324 B: S/W cis !(b_s) 44_69, B: 139 A-G 164 B: H/S tran !(b_s) 124_158, B: 219 A-G 254 B: H/S tran !(b_s) 124_177, B: 219 A-U 273 B: W/S tran !(b_s) 175_207, B: 271 U-G 303 B: S/W cis syn !(b_s) 14_164, B: 109 C-C 260 B: ./? tran syn !b_(O1P,O2P) 116_164, B: 211 C-C 260 B: H/W tran syn !b_(O1P,O2P) 140_143, B: 235 G-A 238 B: S/H tran !b_(O1P,O2P) 7_123, B: 102 C-A 218 B: S/S cis !(s_s) 9_122, B: 104 A-C 217 B: S/S cis !(s_s) 10_121, B: 105 A-C 216 B: S/S cis !(s_s) 11_162, B: 106 U-U 258 B: S/S tran !(s_s) 14_89, B: 109 C-A 184 B: S/S cis !(s_s) 18_113, B: 113 A-C 208 B: W/W cis !(s_s) 31_107, B: 126 G-U 202 B: S/S cis !(s_s) 42_91, B: 137 C-A 186 B: S/S cis !(s_s) 43_44, B: 138 C-A 139 B: S/S cis !(s_s) 44_90, B: 139 A-U 185 B: S/S cis !(s_s) 55_57, B: 150 G-A 152 B: S/S tran !(s_s) 57_129, B: 152 A-U 224 B: S/S cis !(s_s) 58_128, B: 153 A-C 223 B: S/S cis !(s_s) 58_129, B: 153 A-U 224 B: S/S cis !(s_s) 59_155, B: 154 C-G 251 B: S/S cis !(s_s) 72_73, B: 167 U-U 168 B: S/S cis !(s_s) 73_74, B: 168 U-G 169 B: S/. cis !(s_s) 90_91, B: 185 U-A 186 B: S/H cis !(s_s) 92_93, B: 187 A-G 188 B: S/S cis syn !(s_s) 93_94, B: 188 G-C 189 B: S/S cis syn !(s_s) 122_123, B: 217 C-A 218 B: S/H cis !(s_s) 130_131, B: 225 A-A 226 B: S/H cis !(s_s) 173_174, B: 269 G-A 270 B: S/S cis !(s_s) END_base-pair Summary of triplets and higher multiplets BEGIN_multiplets 10_121_161_| [1 3] B: 105 A + B: 216 C + B: 257 G 14_89_117_| [2 3] B: 109 C + B: 184 A + B: 212 G 20_21_110_| [3 3] B: 115 A + B: 116 G + B: 205 U 24_107_229_| [4 3] B: 119 G + B: 202 U + B: 325 A 26_28_102_105_| [5 4] B: 121 C + B: 123 A + B: 197 C + B: 200 G 42_86_91_| [6 3] B: 137 C + B: 181 G + B: 186 A 58_128_154_| [7 3] B: 153 A + B: 223 C + B: 250 G 165_169_214_| [8 3] B: 261 A + B: 265 A + B: 310 U 166_167_216_| [9 3] B: 262 C + B: 263 A + B: 312 G 168_215_247_| [10 3] B: 264 G + B: 311 C + B: 414 G 170_210_213_| [11 3] B: 266 C + B: 306 A + B: 309 G END_multiplets The total base pairs = 98 (from 247 bases) ------------------------------------------------ Standard WW--cis WW-tran HH--cis HH-tran SS--cis SS-tran 59 20 1 0 1 2 4 WH--cis WH-tran WS--cis WS-tran HS--cis HS-tran 2 4 2 0 0 3 ------------------------------------------------