matchFast
RNA V 5       CGCGGGAUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUCAAAUCCGGCCCCCGCAA
mobilizer Rigid V 5 77

removeRigidBodyMomentum false
densityMapActivate true
densityForceConstant 1.00
densityFileName ./tRNA.xplor

initialSeparation 20 

temperature 1
numReportingIntervals 100

reportingInterval 1    
#reportingInterval  10.00



firstStage 2    
lastStage 2