forceMultiplier 20
useOpenMMAcceleration false
DNA A 1       AAGGGAAACCCTT

removeRigidBodyMomentum false
initialSeparation 20 

temperature 1   1   
numReportingIntervals 100

#reportingInterval .01    
#reportingInterval  10.00



firstStage 1    
lastStage 1         

nucleicAcidDuplex A 1 5 A 13 9