calcEnergy true
RNA A 1 AGGGGU
firstStage 1
lastStage 1
baseInteractionScaleFactor     10
temperature 1.0 1
#addSelectedAtoms true
baseInteraction A 1 WatsonCrick A 6 WatsonCrick Cis  

leontisWesthofInFileName parameters.csv
loadTinkerParameterFile 0
reportingInterval 1.0