#Folylpolyglutamate Synthetase
randomizeInitialVelocities true
addProteinBackboneSterics true
#writeFrameFile true
#proteinCapping false 
matchIdealized false
#deleted the last residue P for increasing the speed of the run in RNABuilder.
protein A 1 MNYTETVAYIHSFPRLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKDYAAMADRLTAAFSTVYLVPVPGTPRALPEAGYEALHEGRLKDSWQEALAASLNDVPDQPIVITGSLYLASAVRQTLLGGKS
# 1WDN       #KLVVATDTAFVPFEFKQGDLYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTEPKQ
#protein Z 228 Q
#firstResidueNumber A 5
#firstResidueNumber Z 228
readFromStage 100
waterDropletMake False 
waterDropletRadius 8  
waterDropletX -10
waterDropletY -35
waterDropletZ 0
readBlockEnd
firstStage 2 
lastStage 20
reportingInterval 10
integratorAccuracy 0.00001 # default was .0001
#readFromStage 1000
mobilizer A 1 Rigid A 295
mobilizer A 298 Rigid A 428
#constrainToGround A 5
constrainToGround A 420
#readBlockEnd
removeRigidBodyMomentum false
temperature 150 1
#atomSpring A 49 C A 115 C