PATH=/usr/local/bin:$PATH
#
# Your previous .profile  (if any) is saved as .profile.dpsaved
# Setting the path for DarwinPorts.
# export PATH=/Applications/TextEdit.app/Contents/MacOS:/Users/samuelflores/Desktop/NAMD_2.6_MacOSX-i686:/Applications/VMD1.8.6.app/Contents/MacOS:/opt/local/bin:/opt/local/sbin:/usr/local/mysql/bin:/usr/local/bin:$PATH

alias he='/usr/bin/head'
alias mr='rm RNABuilder.o RNABuilder.exec; make RNABuilder.o; make RNABuilder.exec';
alias bx='ssh scflores@biox2.stanford.edu'
alias mm='ssh scf22@molmovdb.org'
alias gnuplot='/Applications/Gnuplot.app/Contents/Resources/bin/gnuplot'
alias ct='cat  trajectory.1.pdb trajectory.2.pdb trajectory.3.pdb trajectory.4.pdb trajectory.5.pdb  trajectory.6.pdb trajectory.7.pdb  trajectory.8.pdb trajectory.9.pdb   trajectory.10.pdb trajectory.11.pdb trajectory.12.pdb trajectory.13.pdb trajectory.14.pdb trajectory.15.pdb  trajectory.16.pdb trajectory.17.pdb  trajectory.18.pdb trajectory.19.pdb   trajectory.20.pdb trajectory.21.pdb trajectory.22.pdb trajectory.23.pdb trajectory.24.pdb trajectory.25.pdb   trajectory.26.pdb trajectory.27.pdb trajectory.28.pdb trajectory.29.pdb trajectory.30.pdb > temp.pdb'
#//alias cm='cat  mymovie.serial.1.pdb mymovie.serial.2.pdb mymovie.serial.3.pdb mymovie.serial.4.pdb mymovie.serial.5.pdb  mymovie.serial.6.pdb mymovie.serial.7.pdb  mymovie.serial.8.pdb mymovie.serial.9.pdb   mymovie.serial.10.pdb mymovie.serial.11.pdb mymovie.serial.12.pdb mymovie.serial.13.pdb mymovie.serial.14.pdb mymovie.serial.15.pdb  mymovie.serial.16.pdb mymovie.serial.17.pdb  mymovie.serial.18.pdb mymovie.serial.19.pdb   mymovie.serial.20.pdb mymovie.serial.21.pdb mymovie.serial.22.pdb mymovie.serial.23.pdb mymovie.serial.24.pdb mymovie.serial.25.pdb   mymovie.serial.26.pdb mymovie.serial.27.pdb mymovie.serial.28.pdb mymovie.serial.29.pdb mymovie.serial.30.pdb > temp.pdb'
export BXC='scp scflores@biox2.stanford.edu:/scratch/users/scflores/rna-dynamics'
export BXT='scp scflores@biox2.stanford.edu:/home/scflores/svn/tar-dynamics'
export BIOX2_USER=scflores

# This is needed for SimTK
export DYLD_LIBRARY_PATH=/usr/local/SimTK/core/lib
export DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:/usr/local/cuda/lib/
#export DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:/usr/local/cuda/lib/
#export DYLD_LIBRARY_PATH=/Developer/SimTK/core/lib

test -r /sw/bin/init.sh && . /sw/bin/init.sh
# source /Users/samuelflores/.profile