firstStage 1
lastStage 2
numReportingIntervals 100
forceMultiplier 1000
RNA Amyismyname 1 AAA
RNA Amyismyname2 1 UUU

contact AllHeavyAtomSterics Amyismyname
contact AllHeavyAtomSterics Amyismyname2
matchPurineN1AtomLocations FALSE
substituteResidue Amyismyname 3 G

nucleicAcidDuplex Amyismyname 1 3 Amyismyname2 3 1
readAtStage 2
dutyCycle .8
scrubberPeriod 5
readBlockEnd