# To run this example, issue:
# cp tRNA.pdb last.1.pdb
# also make sure you have tRNA.xplor in the current directory.
# And follow the tutorial guide!
matchFast
RNA V 5       CGCGGGAUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUCAAAUCCGGCCCCCGCAA
mobilizer Rigid V 5 77

removeRigidBodyMomentum false
densityForceConstant 1.00
densityFileName ./tRNA.xplor
fitToDensity V

initialSeparation 20 

temperature 1
numReportingIntervals 100

reportingInterval 1    
#reportingInterval  10.00



firstStage 2    
lastStage 2