generate-base-pair-transform.o : ../src/generate-base-pair-transform.cpp
	g++ -o generate-base-pair-transform.o -c ../src/generate-base-pair-transform.cpp  -I/usr/local/SimTK/include/molmodel/internal  -I/usr/local/SimTK/include -I/usr/local/SimTK/include/simbody/  -I/usr/include/c++/4.2.1  
#-arch x86_64 
#-arch was i386

generate-base-pair-transform : generate-base-pair-transform.o
	g++ -o generate-base-pair-transform  generate-base-pair-transform.o  -I/usr/local/SimTK/include/SimTKcommon/internal  -I/usr/local/SimTK/include/molmodel/internal   -I/usr/local/SimTK/include -L/usr/local/SimTK/lib  -lSimTKcommon -lSimTKmolmodel -lSimTKsimbody -lSimTKmath -llapack -lblas -arch x86_64
#-arch x86_64
#-02 -liostream -lfstream -lstdlib -lstring -I