This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by configure, which was generated by GNU Autoconf 2.57. Invocation command line was $ ./configure --prefix=/home/jacklm/cca_ballan/install/cfrfs ## --------- ## ## Platform. ## ## --------- ## hostname = jack-bioeng.stanford.edu uname -m = x86_64 uname -r = 2.6.9-5.ELsmp uname -s = Linux uname -v = #1 SMP Wed Jan 5 19:29:47 EST 2005 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: . PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /usr/X11R6/bin PATH: /home/jacklm/bin PATH: /usr/java/j2sdk1.4.2_07/bin PATH: /usr/java/j2sdk1.4.2_07/jre/bin PATH: /usr/java/j2re1.4.2_07/bin PATH: /home/jacklm/cca/neo/install/bin PATH: /home/jacklm/cca/neo/ccaffeine-0.5.5/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1248: checking build system type configure:1266: result: x86_64-unknown-linux-gnu configure:1274: checking host system type configure:1288: result: x86_64-unknown-linux-gnu configure:1296: checking target system type configure:1310: result: x86_64-unknown-linux-gnu configure:1370: checking for gcc configure:1386: found /usr/bin/gcc configure:1396: result: gcc configure:1640: checking for C compiler version configure:1643: gcc --version &5 gcc (GCC) 3.4.3 20041212 (Red Hat 3.4.3-9.EL4) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:1646: $? = 0 configure:1648: gcc -v &5 Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.3/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-languages=c,c++,objc,java,f77 --enable-java-awt=gtk --host=x86_64-redhat-linux Thread model: posix gcc version 3.4.3 20041212 (Red Hat 3.4.3-9.EL4) configure:1651: $? = 0 configure:1653: gcc -V &5 gcc: `-V' option must have argument configure:1656: $? = 1 configure:1680: checking for C compiler default output configure:1683: gcc conftest.c >&5 configure:1686: $? = 0 configure:1732: result: a.out configure:1737: checking whether the C compiler works configure:1743: ./a.out configure:1746: $? = 0 configure:1763: result: yes configure:1770: checking whether we are cross compiling configure:1772: result: no configure:1775: checking for suffix of executables configure:1777: gcc -o conftest conftest.c >&5 configure:1780: $? = 0 configure:1805: result: configure:1811: checking for suffix of object files configure:1833: gcc -c conftest.c >&5 configure:1836: $? = 0 configure:1858: result: o configure:1862: checking whether we are using the GNU C compiler configure:1887: gcc -c conftest.c >&5 configure:1890: $? = 0 configure:1893: test -s conftest.o configure:1896: $? = 0 configure:1909: result: yes configure:1915: checking whether gcc accepts -g configure:1937: gcc -c -g conftest.c >&5 configure:1940: $? = 0 configure:1943: test -s conftest.o configure:1946: $? = 0 configure:1957: result: yes configure:1974: checking for gcc option to accept ANSI C configure:2035: gcc -c -g -O2 conftest.c >&5 configure:2038: $? = 0 configure:2041: test -s conftest.o configure:2044: $? = 0 configure:2062: result: none needed configure:2080: gcc -c -g -O2 conftest.c >&5 conftest.c:2: error: syntax error before "me" configure:2083: $? = 1 configure: failed program was: | #ifndef __cplusplus | choke me | #endif configure:2198: checking how to run the C preprocessor configure:2234: gcc -E conftest.c configure:2240: $? = 0 configure:2272: gcc -E conftest.c configure:2271:28: ac_nonexistent.h: No such file or directory configure:2278: $? = 1 configure: failed program was: | #line 2263 "configure" | /* confdefs.h. */ | | #define PACKAGE_NAME "" | #define PACKAGE_TARNAME "" | #define PACKAGE_VERSION "" | #define PACKAGE_STRING "" | #define PACKAGE_BUGREPORT "" | /* end confdefs.h. */ | #include configure:2316: result: gcc -E configure:2341: gcc -E conftest.c configure:2347: $? = 0 configure:2379: gcc -E conftest.c configure:2378:28: ac_nonexistent.h: No such file or directory configure:2385: $? = 1 configure: failed program was: | #line 2370 "configure" | /* confdefs.h. */ | | #define PACKAGE_NAME "" | #define PACKAGE_TARNAME "" | #define PACKAGE_VERSION "" | #define PACKAGE_STRING "" | #define PACKAGE_BUGREPORT "" | /* end confdefs.h. */ | #include configure:2428: checking for egrep configure:2438: result: grep -E configure:2443: checking for ANSI C header files configure:2469: gcc -c -g -O2 conftest.c >&5 configure:2472: $? = 0 configure:2475: test -s conftest.o configure:2478: $? = 0 configure:2570: gcc -o conftest -g -O2 conftest.c >&5 configure:2573: $? = 0 configure:2575: ./conftest configure:2578: $? = 0 configure:2593: result: yes configure:2637: checking for doxygen configure:2653: found /usr/bin/doxygen configure:2664: result: doxygen configure:2776: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by config.status, which was generated by GNU Autoconf 2.57. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on jack-bioeng.stanford.edu config.status:614: creating MakeIncl.CFRFS_Ports ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_build_alias=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext= ac_cv_header_stdc=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_host_alias=x86_64-unknown-linux-gnu ac_cv_objext=o ac_cv_prog_CPP='gcc -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_doxygen_1=doxygen ac_cv_prog_egrep='grep -E' ac_cv_target=x86_64-unknown-linux-gnu ac_cv_target_alias=x86_64-unknown-linux-gnu ## ----------------- ## ## Output variables. ## ## ----------------- ## CC='gcc' CFLAGS='-g -O2' CPP='gcc -E' CPPFLAGS='' DEFS='-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 ' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='grep -E' EXEEXT='' FINAL_INSTALL_DIR='/home/jacklm/cca_ballan/install/cfrfs' LDFLAGS='' LIBOBJS='' LIBS='' LTLIBOBJS='' OBJEXT='o' PACKAGE_BUGREPORT='' PACKAGE_NAME='' PACKAGE_STRING='' PACKAGE_TARNAME='' PACKAGE_VERSION='' PATH_SEPARATOR=':' SHELL='/bin/sh' ac_ct_CC='gcc' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${prefix}/share' doxygen_1='doxygen' exec_prefix='/home/jacklm/cca_ballan/install/cfrfs' full_path_to_doxygen='/usr/bin/doxygen' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' includedir='${prefix}/include' infodir='${prefix}/info' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localstatedir='${prefix}/var' mandir='${prefix}/man' oldincludedir='/usr/include' prefix='/home/jacklm/cca_ballan/install/cfrfs' program_transform_name='s,x,x,' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-unknown-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='unknown' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_BUGREPORT "" #define PACKAGE_NAME "" #define PACKAGE_STRING "" #define PACKAGE_TARNAME "" #define PACKAGE_VERSION "" #define STDC_HEADERS 1 configure: exit 0