This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by configure, which was generated by GNU Autoconf 2.57. Invocation command line was $ ./configure --prefix=/home/jacklm/cca_ballan/install/cfrfs --with-cca-spec-classic-config=/home/jacklm/cca/cca-tools-0.5.7_rc2/local/bin/cca-spec-classic-config --with-CFRFS_Ports=/home/jacklm/cca_ballan/install/cfrfs/include/CFRFS_Ports --with-ccafe-config=/home/jacklm/cca_ballan/install/ccafe/bin ## --------- ## ## Platform. ## ## --------- ## hostname = jack-bioeng.stanford.edu uname -m = x86_64 uname -r = 2.6.9-5.ELsmp uname -s = Linux uname -v = #1 SMP Wed Jan 5 19:29:47 EST 2005 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: . PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /usr/X11R6/bin PATH: /home/jacklm/bin PATH: /usr/java/j2sdk1.4.2_07/bin PATH: /usr/java/j2sdk1.4.2_07/jre/bin PATH: /usr/java/j2re1.4.2_07/bin PATH: /home/jacklm/cca/neo/install/bin PATH: /home/jacklm/cca/neo/ccaffeine-0.5.5/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1325: checking build system type configure:1343: result: x86_64-unknown-linux-gnu configure:1351: checking host system type configure:1365: result: x86_64-unknown-linux-gnu configure:1373: checking target system type configure:1387: result: x86_64-unknown-linux-gnu configure:1447: checking for gcc configure:1463: found /usr/bin/gcc configure:1473: result: gcc configure:1717: checking for C compiler version configure:1720: gcc --version &5 gcc (GCC) 3.4.3 20041212 (Red Hat 3.4.3-9.EL4) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:1723: $? = 0 configure:1725: gcc -v &5 Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.3/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-languages=c,c++,objc,java,f77 --enable-java-awt=gtk --host=x86_64-redhat-linux Thread model: posix gcc version 3.4.3 20041212 (Red Hat 3.4.3-9.EL4) configure:1728: $? = 0 configure:1730: gcc -V &5 gcc: `-V' option must have argument configure:1733: $? = 1 configure:1757: checking for C compiler default output configure:1760: gcc conftest.c >&5 configure:1763: $? = 0 configure:1809: result: a.out configure:1814: checking whether the C compiler works configure:1820: ./a.out configure:1823: $? = 0 configure:1840: result: yes configure:1847: checking whether we are cross compiling configure:1849: result: no configure:1852: checking for suffix of executables configure:1854: gcc -o conftest conftest.c >&5 configure:1857: $? = 0 configure:1882: result: configure:1888: checking for suffix of object files configure:1910: gcc -c conftest.c >&5 configure:1913: $? = 0 configure:1935: result: o configure:1939: checking whether we are using the GNU C compiler configure:1964: gcc -c conftest.c >&5 configure:1967: $? = 0 configure:1970: test -s conftest.o configure:1973: $? = 0 configure:1986: result: yes configure:1992: checking whether gcc accepts -g configure:2014: gcc -c -g conftest.c >&5 configure:2017: $? = 0 configure:2020: test -s conftest.o configure:2023: $? = 0 configure:2034: result: yes configure:2051: checking for gcc option to accept ANSI C configure:2112: gcc -c -g -O2 conftest.c >&5 configure:2115: $? = 0 configure:2118: test -s conftest.o configure:2121: $? = 0 configure:2139: result: none needed configure:2157: gcc -c -g -O2 conftest.c >&5 conftest.c:2: error: syntax error before "me" configure:2160: $? = 1 configure: failed program was: | #ifndef __cplusplus | choke me | #endif configure:2275: checking how to run the C preprocessor configure:2311: gcc -E conftest.c configure:2317: $? = 0 configure:2349: gcc -E conftest.c configure:2348:28: ac_nonexistent.h: No such file or directory configure:2355: $? = 1 configure: failed program was: | #line 2340 "configure" | /* confdefs.h. */ | | #define PACKAGE_NAME "" | #define PACKAGE_TARNAME "" | #define PACKAGE_VERSION "" | #define PACKAGE_STRING "" | #define PACKAGE_BUGREPORT "" | /* end confdefs.h. */ | #include configure:2393: result: gcc -E configure:2418: gcc -E conftest.c configure:2424: $? = 0 configure:2456: gcc -E conftest.c configure:2455:28: ac_nonexistent.h: No such file or directory configure:2462: $? = 1 configure: failed program was: | #line 2447 "configure" | /* confdefs.h. */ | | #define PACKAGE_NAME "" | #define PACKAGE_TARNAME "" | #define PACKAGE_VERSION "" | #define PACKAGE_STRING "" | #define PACKAGE_BUGREPORT "" | /* end confdefs.h. */ | #include configure:2505: checking for egrep configure:2515: result: grep -E configure:2520: checking for ANSI C header files configure:2546: gcc -c -g -O2 conftest.c >&5 configure:2549: $? = 0 configure:2552: test -s conftest.o configure:2555: $? = 0 configure:2647: gcc -o conftest -g -O2 conftest.c >&5 configure:2650: $? = 0 configure:2652: ./conftest configure:2655: $? = 0 configure:2670: result: yes configure:2694: checking for sys/types.h configure:2711: gcc -c -g -O2 conftest.c >&5 configure:2714: $? = 0 configure:2717: test -s conftest.o configure:2720: $? = 0 configure:2731: result: yes configure:2694: checking for sys/stat.h configure:2711: gcc -c -g -O2 conftest.c >&5 configure:2714: $? = 0 configure:2717: test -s conftest.o configure:2720: $? = 0 configure:2731: result: yes configure:2694: checking for stdlib.h configure:2711: gcc -c -g -O2 conftest.c >&5 configure:2714: $? = 0 configure:2717: test -s conftest.o configure:2720: $? = 0 configure:2731: result: yes configure:2694: checking for string.h configure:2711: gcc -c -g -O2 conftest.c >&5 configure:2714: $? = 0 configure:2717: test -s conftest.o configure:2720: $? = 0 configure:2731: result: yes configure:2694: checking for memory.h configure:2711: gcc -c -g -O2 conftest.c >&5 configure:2714: $? = 0 configure:2717: test -s conftest.o configure:2720: $? = 0 configure:2731: result: yes configure:2694: checking for strings.h configure:2711: gcc -c -g -O2 conftest.c >&5 configure:2714: $? = 0 configure:2717: test -s conftest.o configure:2720: $? = 0 configure:2731: result: yes configure:2694: checking for inttypes.h configure:2711: gcc -c -g -O2 conftest.c >&5 configure:2714: $? = 0 configure:2717: test -s conftest.o configure:2720: $? = 0 configure:2731: result: yes configure:2694: checking for stdint.h configure:2711: gcc -c -g -O2 conftest.c >&5 configure:2714: $? = 0 configure:2717: test -s conftest.o configure:2720: $? = 0 configure:2731: result: yes configure:2694: checking for unistd.h configure:2711: gcc -c -g -O2 conftest.c >&5 configure:2714: $? = 0 configure:2717: test -s conftest.o configure:2720: $? = 0 configure:2731: result: yes configure:2761: checking fcntl.h usability configure:2774: gcc -c -g -O2 conftest.c >&5 configure:2777: $? = 0 configure:2780: test -s conftest.o configure:2783: $? = 0 configure:2793: result: yes configure:2797: checking fcntl.h presence configure:2808: gcc -E conftest.c configure:2814: $? = 0 configure:2833: result: yes configure:2869: checking for fcntl.h configure:2876: result: yes configure:2752: checking for strings.h configure:2757: result: yes configure:2761: checking sys/file.h usability configure:2774: gcc -c -g -O2 conftest.c >&5 configure:2777: $? = 0 configure:2780: test -s conftest.o configure:2783: $? = 0 configure:2793: result: yes configure:2797: checking sys/file.h presence configure:2808: gcc -E conftest.c configure:2814: $? = 0 configure:2833: result: yes configure:2869: checking for sys/file.h configure:2876: result: yes configure:2761: checking sys/time.h usability configure:2774: gcc -c -g -O2 conftest.c >&5 configure:2777: $? = 0 configure:2780: test -s conftest.o configure:2783: $? = 0 configure:2793: result: yes configure:2797: checking sys/time.h presence configure:2808: gcc -E conftest.c configure:2814: $? = 0 configure:2833: result: yes configure:2869: checking for sys/time.h configure:2876: result: yes configure:2752: checking for unistd.h configure:2757: result: yes configure:2934: checking for cca-spec-classic-config configure:2938: result: Found "/home/jacklm/cca/cca-tools-0.5.7_rc2/local/bin/cca-spec-classic-config" configure:3010: checking for ccafe-config configure:3014: result: Found "/home/jacklm/cca_ballan/install/ccafe/bin" configure:3086: checking for AMRPort.h configure:3090: result: Found "/home/jacklm/cca_ballan/install/cfrfs/include/CFRFS_Ports"/AMRPort.h configure:3213: checking for g77 configure:3225: result: found it in /usr/bin configure:3294: checking for g++ configure:3310: found /usr/bin/g++ configure:3320: result: g++ configure:3336: checking for C++ compiler version configure:3339: g++ --version &5 g++ (GCC) 3.4.3 20041212 (Red Hat 3.4.3-9.EL4) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3342: $? = 0 configure:3344: g++ -v &5 Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.3/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-languages=c,c++,objc,java,f77 --enable-java-awt=gtk --host=x86_64-redhat-linux Thread model: posix gcc version 3.4.3 20041212 (Red Hat 3.4.3-9.EL4) configure:3347: $? = 0 configure:3349: g++ -V &5 g++: `-V' option must have argument configure:3352: $? = 1 configure:3355: checking whether we are using the GNU C++ compiler configure:3380: g++ -c conftest.cc >&5 configure:3383: $? = 0 configure:3386: test -s conftest.o configure:3389: $? = 0 configure:3402: result: yes configure:3408: checking whether g++ accepts -g configure:3430: g++ -c -g conftest.cc >&5 configure:3433: $? = 0 configure:3436: test -s conftest.o configure:3439: $? = 0 configure:3450: result: yes configure:3494: g++ -c -g -O2 conftest.cc >&5 configure:3497: $? = 0 configure:3500: test -s conftest.o configure:3503: $? = 0 configure:3530: g++ -c -g -O2 conftest.cc >&5 configure: In function `int main()': configure:3540: error: `exit' undeclared (first use this function) configure:3540: error: (Each undeclared identifier is reported only once for each function it appears in.) configure:3533: $? = 1 configure: failed program was: | #line 3513 "configure" | /* confdefs.h. */ | | #define PACKAGE_NAME "" | #define PACKAGE_TARNAME "" | #define PACKAGE_VERSION "" | #define PACKAGE_STRING "" | #define PACKAGE_BUGREPORT "" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | | int | main () | { | exit (42); | ; | return 0; | } configure:3494: g++ -c -g -O2 conftest.cc >&5 configure:3497: $? = 0 configure:3500: test -s conftest.o configure:3503: $? = 0 configure:3530: g++ -c -g -O2 conftest.cc >&5 configure:3533: $? = 0 configure:3536: test -s conftest.o configure:3539: $? = 0 configure:3567: checking how to run the C++ preprocessor configure:3599: g++ -E conftest.cc configure:3605: $? = 0 configure:3637: g++ -E conftest.cc configure:3654:28: ac_nonexistent.h: No such file or directory configure:3643: $? = 1 configure: failed program was: | #line 3628 "configure" | /* confdefs.h. */ | | #define PACKAGE_NAME "" | #define PACKAGE_TARNAME "" | #define PACKAGE_VERSION "" | #define PACKAGE_STRING "" | #define PACKAGE_BUGREPORT "" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #ifdef __cplusplus | #include | #endif | /* end confdefs.h. */ | #include configure:3681: result: g++ -E configure:3706: g++ -E conftest.cc configure:3712: $? = 0 configure:3744: g++ -E conftest.cc configure:3761:28: ac_nonexistent.h: No such file or directory configure:3750: $? = 1 configure: failed program was: | #line 3735 "configure" | /* confdefs.h. */ | | #define PACKAGE_NAME "" | #define PACKAGE_TARNAME "" | #define PACKAGE_VERSION "" | #define PACKAGE_STRING "" | #define PACKAGE_BUGREPORT "" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #ifdef __cplusplus | #include | #endif | /* end confdefs.h. */ | #include configure:3990: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by config.status, which was generated by GNU Autoconf 2.57. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on jack-bioeng.stanford.edu config.status:652: creating MakeIncl.Numerics config.status:652: creating Doxygen.Numerics config.status:652: creating BicubicInterpolator/ccaComponent/BicubicInterp.cca config.status:652: creating CvodeComponent/ccaComponent/CvodeComponent.cca config.status:652: creating Error/ccaComponent/Errest_JR.cca config.status:652: creating Filters/ccaComponent/Filter.cca config.status:652: creating Integrator/ccaComponent/Integrator_JR.cca config.status:652: creating RKC2/ccaComponent/RKC2_Recursive.cca config.status:652: creating SpatialInterpolations/ccaComponent/SpatialInterp.cca config.status:776: executing default commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_build_alias=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext= ac_cv_header_fcntl_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_file_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_host_alias=x86_64-unknown-linux-gnu ac_cv_objext=o ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_cxx_g=yes ac_cv_prog_egrep='grep -E' ac_cv_target=x86_64-unknown-linux-gnu ac_cv_target_alias=x86_64-unknown-linux-gnu ## ----------------- ## ## Output variables. ## ## ----------------- ## CC='gcc' CFLAGS='-g -O2' CFRFS_PORTS_DIR='/home/jacklm/cca_ballan/install/cfrfs/include/CFRFS_Ports' CPP='gcc -E' CPPFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXFLAGS='-g -O2' DEFS='-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FCNTL_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 ' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='grep -E' EXEEXT='' FC='/usr/bin/g77' FCOMPILERNAME='G77' FINAL_INSTALL_DIR='/home/jacklm/cca_ballan/install/cfrfs' FTNRTL='-lg2c -lm' LDFLAGS='' LIBOBJS='' LIBS='' LTLIBOBJS='' OBJEXT='o' PACKAGE_BUGREPORT='' PACKAGE_NAME='' PACKAGE_STRING='' PACKAGE_TARNAME='' PACKAGE_VERSION='' PATH_SEPARATOR=':' SHELL='/bin/sh' ac_ct_CC='gcc' ac_ct_CXX='g++' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' cca_cxx='c++' cca_cxx_flags='-g -O2' cca_inc='-I/home/jacklm/cca/cca-tools-0.5.7_rc2/local/include/cca-spec-classic-0.5.6' cca_ld_search_flags='-Wl,-rpath,${LIB_RUNTIME_DIR}' cca_shlib_cflags='-fPIC' cca_shlib_ld='c++ -shared' ccafe_cc='' ccafe_cflags_optimize='' ccafe_lib_l='' ccafe_lib_l_dir='' ccafe_mpi_inc='' ccafe_pkgincludedir='' datadir='${prefix}/share' exec_prefix='/home/jacklm/cca_ballan/install/cfrfs' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' includedir='${prefix}/include' infodir='${prefix}/info' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localstatedir='${prefix}/var' mandir='${prefix}/man' oldincludedir='/usr/include' prefix='/home/jacklm/cca_ballan/install/cfrfs' program_transform_name='s,x,x,' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-unknown-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='unknown' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define HAVE_FCNTL_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRINGS_H 1 #define HAVE_STRINGS_H 1 #define HAVE_STRING_H 1 #define HAVE_SYS_FILE_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define HAVE_UNISTD_H 1 #define PACKAGE_BUGREPORT "" #define PACKAGE_NAME "" #define PACKAGE_STRING "" #define PACKAGE_TARNAME "" #define PACKAGE_VERSION "" #define STDC_HEADERS 1 #endif #ifdef __cplusplus #include configure: exit 0