#---------------------------------------------------
# Yank
#
# Creates Yank executable
#----------------------------------------------------

# On Linux it appears that cmake 2.4 does not work with Cuda cmake rules
CMAKE_MINIMUM_REQUIRED(VERSION 2.6)

# For debugging
SET(CMAKE_VERBOSE_MAKEFILE 1)

# Define the project    
PROJECT(yank)

# Define include and lib directories
#INCLUDE_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/include $ENV{OPENMM_SOURCE_DIR} /opt/local/include )
#LINK_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/lib $ENV{OPENMM_INSTALL_DIR}/lib/plugins /opt/local/lib )

# Standard
#INCLUDE_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/include $ENV{OPENMM_SOURCE_DIR} $ENV{HOME}/local/include /opt/local/include /usr/local/include /usr/local/cuda/include $ENV{NETCDF_INSTALL_DIR}/include $ENV{CUDA_INSTALL_DIR}/include )
#LINK_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/lib $ENV{OPENMM_INSTALL_DIR}/lib/plugins $ENV{HOME}/local/lib /opt/local/lib /usr/local/lib /usr/local/cuda/lib $ENV{NETCDF_INSTALL_DIR}/lib $ENV{CUDA_INSTALL_DIR}/lib )

# For NCSA Lincoln.
#INCLUDE_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/include $ENV{OPENMM_SOURCE_DIR} $ENV{HOME}/local/include /opt/local/include /usr/local/include $ENV{NETCDF_INSTALL_DIR}/include $ENV{CUDA_INSTALL_DIR}/include )
#LINK_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/lib $ENV{OPENMM_INSTALL_DIR}/lib/plugins $ENV{HOME}/local/lib /opt/local/lib /usr/local/lib $ENV{NETCDF_INSTALL_DIR}/lib $ENV{CUDA_INSTALL_DIR}/lib64 )

# With enthought.
#INCLUDE_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/include $ENV{OPENMM_SOURCE_DIR} /Library/Frameworks/Python.framework/Versions/Current/include /opt/local/include /usr/local/include /usr/local/cuda/include $ENV{NETCDF_INSTALL_DIR}/include $ENV{CUDA_INSTALL_DIR}/include $ENV{HOME}/local/include )
#LINK_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/lib $ENV{OPENMM_INSTALL_DIR}/lib/plugins /Library/Frameworks/Python.framework/Versions/Current/lib /opt/local/lib /usr/local/lib /usr/local/cuda/lib $ENV{NETCDF_INSTALL_DIR}/lib $ENV{CUDA_INSTALL_DIR}/lib $ENV{HOME}/local/lib )

# Enthought on OS X
#INCLUDE_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/include $ENV{OPENMM_SOURCE_DIR} /Library/Frameworks/Python.framework/Versions/Current/include /opt/local/include /usr/local/include $ENV{CUDA_INSTALL_DIR}/include )
#LINK_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/lib $ENV{OPENMM_INSTALL_DIR}/lib/plugins /Library/Frameworks/Python.framework/Versions/Current/lib /opt/local/lib /usr/local/lib $ENV{CUDA_INSTALL_DIR}/lib )

# Enthought 64bit
#INCLUDE_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/include $ENV{OPENMM_SOURCE_DIR} /Library/Frameworks/EPD64.framework/Versions/Current/include /opt/local/include /usr/local/include $ENV{CUDA_INSTALL_DIR}/include )
#LINK_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/lib $ENV{OPENMM_INSTALL_DIR}/lib/plugins /Library/Frameworks/EPD64.framework/Versions/Current/lib /opt/local/lib /usr/local/lib $ENV{CUDA_INSTALL_DIR}/lib )

#INCLUDE_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/include $ENV{OPENMM_SOURCE_DIR} $ENV{HOME}/local/include /Library/Frameworks/Python.framework/Versions/Current/include $ENV{CUDA_INSTALL_DIR}/include )
#LINK_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/lib $ENV{OPENMM_INSTALL_DIR}/lib/plugins $ENV{HOME}/local/lib /Library/Frameworks/Python.framework/Versions/Current/lib $ENV{CUDA_INSTALL_DIR}/lib )

# MacPorts NetCDF
INCLUDE_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/include $ENV{OPENMM_SOURCE_DIR} /opt/local/include /usr/local/include $ENV{CUDA_INSTALL_DIR}/include )
LINK_DIRECTORIES( $ENV{OPENMM_INSTALL_DIR}/lib $ENV{OPENMM_INSTALL_DIR}/lib/plugins /opt/local/lib /usr/local/lib $ENV{CUDA_INSTALL_DIR}/lib )


# Define the executables
ADD_EXECUTABLE(yank yank.cpp concurrent_queue.h utils.h restraints.C restraints.h AlchemicalFactory.C AlchemicalFactory.h forcecheck.C forcecheck.h fep.C fep.h amber.C amber.h parm.C parm.h strlib.C strlib.h rng.C rng.h)

# Add link libraries
TARGET_LINK_LIBRARIES(yank OpenMM OpenMMCuda OpenMMFreeEnergy OpenMMFreeEnergyCuda netcdf_c++ netcdf cudart hdf5 hdf5_hl z)

# Set additional compile flags
SET_TARGET_PROPERTIES(yank PROPERTIES COMPILE_FLAGS "-Wall -g -O2 -D__STDC_LIMIT_MACROS -pg")