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Date:
2016-09-16 17:23
Priority:
3
State:
Open
Submitted by:
Tom Goddard (tomgoddard)
Assigned to:
Nobody (None)
Resolution:
None
Summary:
simulatePDB example crashes with OpenCL on Mac 10.11.6

Detailed description
The simluatePDB.py example crashes on Mac OS 10.11.6 with OpenCL and OpenMM 7.0.1 binary install. This is on an iMac with Nvidia GTX 680MX graphics. The simtk.testInstallation worked correctly for OpenCL, CPU and Reference platforms.

I saw in older OpenMM installation instructions that Mac OpenCL drivers were too buggy to use, but this seems to have been removed from OpenMM 7.0.1 instructions. Current instructions say how to use CUDA -- I did not use that because I will be working on an application that needs to work without an Nvidia graphics cards.

This bug is likely a Mac OpenCL issue and I am reporting it just for your info. Perhaps OpenMM Mac installation docs should still have the warning about OpenCL not working.

Here is the Mac crash dump:

Process: Python [7396]
Path: /Library/Frameworks/Python.framework/Versions/3.5/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 3.5.0 (3.5.0)
Code Type: X86-64 (Native)
Parent Process: bash [83380]
Responsible: Python [7396]
User ID: 501

Date/Time: 2016-09-16 10:02:27.179 -0700
OS Version: Mac OS X 10.11.6 (15G1004)
Report Version: 11
Anonymous UUID: ADCA02F2-9A59-6574-CF8F-380125498A20


Time Awake Since Boot: 1100000 seconds

System Integrity Protection: enabled

Crashed Thread: 0 Dispatch queue: opencl_runtime

Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY

Application Specific Information:
abort() called

Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x0000001f


Thread 0 Crashed:: Dispatch queue: opencl_runtime
0 libsystem_kernel.dylib 0x00007fff9acb7f06 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff996dd4ec pthread_kill + 90
2 libsystem_c.dylib 0x00007fff9ae496df abort + 129
3 libGPUSupportMercury.dylib 0x00007fff8d9e2e5c gpusGenerateCrashLog + 158
4 com.apple.GeForceGLDriver 0x00007fff99947dc7 0x7fff99727000 + 2231751
5 libGPUSupportMercury.dylib 0x00007fff8d9e3818 gpusQueueSubmitDataBuffers + 162
6 libclh.dylib 0x00007fff9bd1f026 channelFlushUnitFlushGLK + 278
7 libclh.dylib 0x00007fff9bcb746d channelFlush_UnderLock + 317
8 libclh.dylib 0x00007fff9bcb7521 channelFlush + 33
9 libclh.dylib 0x00007fff9bcba523 channelManagerFlushAllChannels + 51
10 libclh.dylib 0x00007fff9bd20705 clhCtxSynchronize + 21
11 com.apple.GeForceGLDriver 0x00007fff99a2baf6 gldFinishQueue + 253
12 com.apple.opencl 0x00007fff93df5b86 0x7fff93df4000 + 7046
13 com.apple.opencl 0x00007fff93df6058 0x7fff93df4000 + 8280
14 com.apple.opencl 0x00007fff93e14358 0x7fff93df4000 + 131928
15 com.apple.opencl 0x00007fff93e179b8 0x7fff93df4000 + 145848
16 libdispatch.dylib 0x00007fff8cdf040b _dispatch_client_callout + 8
17 libdispatch.dylib 0x00007fff8cdfea9a _dispatch_barrier_sync_f_slow + 856
18 com.apple.opencl 0x00007fff93e17834 0x7fff93df4000 + 145460
19 com.apple.opencl 0x00007fff93e13430 0x7fff93df4000 + 128048
20 com.apple.opencl 0x00007fff93e08777 clEnqueueReadBuffer + 817
21 libOpenMMOpenCL.dylib 0x00000001039aa740 OpenMM::OpenCLArray::download(void*, bool) const + 96
22 libOpenMMOpenCL.dylib 0x00000001039f2763 OpenMM::OpenCLCalcForcesAndEnergyKernel::finishComputation(OpenMM::ContextImpl&, bool, bool, int, bool&) + 323
23 libOpenMM.dylib 0x0000000102305cdb OpenMM::ContextImpl::calcForcesAndEnergy(bool, bool, int) + 267
24 libOpenMM.dylib 0x0000000102301c02 OpenMM::Context::getState(int, bool, int) const + 242
25 libOpenMM.dylib 0x0000000102344148 evaluate(void*, double const*, double*, int, double) + 344
26 libOpenMM.dylib 0x000000010237a309 line_search_backtracking(int, double*, double*, double*, double*, double*, double const*, double const*, double*, tag_callback_data*, lbfgs_parameter_t const*) + 601
27 libOpenMM.dylib 0x0000000102378788 lbfgs + 3064
28 libOpenMM.dylib 0x000000010234395c OpenMM::LocalEnergyMinimizer::minimize(OpenMM::Context&, double, int) + 972
29 _openmm.cpython-35m-darwin.so 0x00000001020a9ceb _wrap_LocalEnergyMinimizer_minimize(_object*, _object*) + 1707 (OpenMMSwig.cxx:70322)
30 org.python.python 0x0000000100065499 PyCFunction_Call + 233
31 org.python.python 0x00000001000efed5 PyEval_EvalFrameEx + 31477
32 org.python.python 0x00000001000f1f00 _PyEval_EvalCodeWithName + 2368
33 org.python.python 0x00000001000f00c2 PyEval_EvalFrameEx + 31970
34 org.python.python 0x00000001000f1f00 _PyEval_EvalCodeWithName + 2368
35 org.python.python 0x00000001000f00c2 PyEval_EvalFrameEx + 31970
36 org.python.python 0x00000001000f1f00 _PyEval_EvalCodeWithName + 2368
37 org.python.python 0x00000001000f2061 PyEval_EvalCode + 81
38 org.python.python 0x000000010012039e PyRun_FileExFlags + 206
39 org.python.python 0x000000010012063f PyRun_SimpleFileExFlags + 447
40 org.python.python 0x00000001001391d8 Py_Main + 3512
41 org.python.python 0x0000000100000e32 0x100000000 + 3634
42 org.python.python 0x0000000100000c84 0x100000000 + 3204

Thread 1:
0 libsystem_kernel.dylib 0x00007fff9acb7db6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff996db728 _pthread_cond_wait + 767
2 libOpenMM.dylib 0x00000001023581b1 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
5 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 2:
0 libsystem_kernel.dylib 0x00007fff9acb7db6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff996db728 _pthread_cond_wait + 767
2 libOpenMM.dylib 0x00000001023581b1 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
5 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 3:
0 libsystem_kernel.dylib 0x00007fff9acb7db6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff996db728 _pthread_cond_wait + 767
2 libOpenMM.dylib 0x00000001023581b1 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
5 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 4:
0 libsystem_kernel.dylib 0x00007fff9acb7db6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff996db728 _pthread_cond_wait + 767
2 libOpenMM.dylib 0x00000001023581b1 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
5 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 5:
0 libsystem_kernel.dylib 0x00007fff9acb7db6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff996db728 _pthread_cond_wait + 767
2 libOpenMM.dylib 0x00000001023581b1 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
5 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 6:
0 libsystem_kernel.dylib 0x00007fff9acb7db6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff996db728 _pthread_cond_wait + 767
2 libOpenMM.dylib 0x00000001023581b1 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
5 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 7:
0 libsystem_kernel.dylib 0x00007fff9acb7db6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff996db728 _pthread_cond_wait + 767
2 libOpenMM.dylib 0x00000001023581b1 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
5 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 8:
0 libsystem_kernel.dylib 0x00007fff9acb7db6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff996db728 _pthread_cond_wait + 767
2 libOpenMM.dylib 0x00000001023581b1 OpenMM::threadBody(void*) + 145
3 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
5 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 9:
0 libsystem_kernel.dylib 0x00007fff9acb85e2 __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff996da578 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff996d8341 start_wqthread + 13

Thread 10:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x00007fff9acb8efa kevent_qos + 10
1 libdispatch.dylib 0x00007fff8cdf6165 _dispatch_mgr_invoke + 216
2 libdispatch.dylib 0x00007fff8cdf5dcd _dispatch_mgr_thread + 52

Thread 11:
0 libsystem_kernel.dylib 0x00007fff9acb85e2 __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff996da578 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff996d8341 start_wqthread + 13

Thread 12:
0 libsystem_kernel.dylib 0x00007fff9acb85e2 __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff996da578 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff996d8341 start_wqthread + 13

Thread 13:
0 libsystem_kernel.dylib 0x00007fff9acb1f72 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff9acb13b3 mach_msg + 55
2 libclh.dylib 0x00007fff9c2cab3e cuosEventWait + 190
3 libclh.dylib 0x00007fff9bccf210 intHandlerMain + 336
4 libclh.dylib 0x00007fff9c2cb929 cuosPosixThreadStartFunc(void*) + 41
5 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
6 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
7 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 14:
0 libsystem_kernel.dylib 0x00007fff9acb7db6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff996db728 _pthread_cond_wait + 767
2 libOpenMMOpenCL.dylib 0x00000001039bf84d threadBody(void*) + 109
3 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
4 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
5 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 15:
0 libsystem_kernel.dylib 0x00007fff9acb1f72 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff9acb13b3 mach_msg + 55
2 libclh.dylib 0x00007fff9c2cab3e cuosEventWait + 190
3 libclh.dylib 0x00007fff9bccf210 intHandlerMain + 336
4 libclh.dylib 0x00007fff9c2cb929 cuosPosixThreadStartFunc(void*) + 41
5 libsystem_pthread.dylib 0x00007fff996da99d _pthread_body + 131
6 libsystem_pthread.dylib 0x00007fff996da91a _pthread_start + 168
7 libsystem_pthread.dylib 0x00007fff996d8351 thread_start + 13

Thread 16:
0 libsystem_kernel.dylib 0x00007fff9acb85e2 __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff996da578 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff996d8341 start_wqthread + 13

Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx: 0x00007fff5bffd8a8 rdx: 0x0000000000000000
rdi: 0x0000000000000a0b rsi: 0x0000000000000006 rbp: 0x00007fff5bffd8d0 rsp: 0x00007fff5bffd8a8
r8: 0x0000000000000002 r9: 0x00007fff8d9ec563 r10: 0x0000000008000000 r11: 0x0000000000000206
r12: 0x000000010086f200 r13: 0x0000000100934200 r14: 0x00007fff7b9c4000 r15: 0x0000000100848400
rip: 0x00007fff9acb7f06 rfl: 0x0000000000000206 cr2: 0x00007fff7c795008

Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133


Binary Images:
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0x100003000 - 0x100212fff +org.python.python (3.5.0, [c] 2001-2015 Python Software Foundation. - 3.5.0) <CF159276-3178-8CCA-C918-5B81CD173154> /Library/Frameworks/Python.framework/Versions/3.5/Python
0x1003e2000 - 0x1003e3fff +_heapq.cpython-35m-darwin.so (???) <169E3F7C-4713-9497-6FA6-80FC7758A6A7> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_heapq.cpython-35m-darwin.so
0x1003e7000 - 0x1003efff7 +libOpenMMRPMD.dylib (0) <EFEC6548-938B-3A1A-B1CF-FCCD4F768B4F> /usr/local/openmm/lib/libOpenMMRPMD.dylib
0x1003f8000 - 0x1003f8fff +grp.cpython-35m-darwin.so (???) <BC1D9844-46B1-E8B1-07E6-3F8064A33405> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/grp.cpython-35m-darwin.so
0x1003fb000 - 0x1003fcfff +_bz2.cpython-35m-darwin.so (???) <75A374C0-DE73-939E-9DCF-4EDF84E2BA51> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_bz2.cpython-35m-darwin.so
0x1015e6000 - 0x101611ff7 +libOpenMMAmoeba.dylib (0) <DC17C125-881A-30CA-8020-C1240F0C8E39> /usr/local/openmm/lib/libOpenMMAmoeba.dylib
0x101638000 - 0x101642fff +libOpenMMDrude.dylib (0) <63B5A27B-E83C-3559-A2BC-3E4685A4FF18> /usr/local/openmm/lib/libOpenMMDrude.dylib
0x1016bb000 - 0x1016c0fef +math.cpython-35m-darwin.so (???) <F166523A-77E2-3E65-6863-93EEF1590CC1> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/math.cpython-35m-darwin.so
0x1016c7000 - 0x1016d4ff7 +_datetime.cpython-35m-darwin.so (???) <D2478362-6A49-5856-173E-34D849B45767> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_datetime.cpython-35m-darwin.so
0x1016df000 - 0x1016e4fff +_struct.cpython-35m-darwin.so (???) <E99850C6-3EA1-3633-A6DE-1C85D7AE288C> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_struct.cpython-35m-darwin.so
0x1016ec000 - 0x1016eeff7 +_hashlib.cpython-35m-darwin.so (???) <E5AB49E7-A1BF-7DFA-D55A-BA64A89649D2> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_hashlib.cpython-35m-darwin.so
0x1016f2000 - 0x1016f3ff7 +_random.cpython-35m-darwin.so (???) <164D05F3-ADC1-F7BC-9D47-E7330FD8171D> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_random.cpython-35m-darwin.so
0x1016f6000 - 0x1016f7ff7 +lapack_lite.cpython-35m-darwin.so (0) <6789EB9F-2135-312A-93F5-2157BC0A20B3> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/numpy/linalg/lapack_lite.cpython-35m-darwin.so
0x102000000 - 0x1021f9ff7 +_openmm.cpython-35m-darwin.so (???) <78403C46-924E-301B-AE03-396E334826BF> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/simtk/openmm/_openmm.cpython-35m-darwin.so
0x1022f8000 - 0x1024a9ff7 +libOpenMM.dylib (0) <2E572663-A598-319C-AC50-4D7743932A48> /usr/local/openmm/lib/libOpenMM.dylib
0x102575000 - 0x10269aff7 +multiarray.cpython-35m-darwin.so (0) <231129FE-DCC2-3941-B0CC-61A909FA6246> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/numpy/core/multiarray.cpython-35m-darwin.so
0x102796000 - 0x1027abff7 +_ctypes.cpython-35m-darwin.so (???) <7287395F-ADE3-63DF-7C0C-8CEF37582B18> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_ctypes.cpython-35m-darwin.so
0x103000000 - 0x10306ffff +umath.cpython-35m-darwin.so (0) <B0DA0C27-FD4E-3887-B465-4600B2D474D3> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/numpy/core/umath.cpython-35m-darwin.so
0x1030e8000 - 0x1030faff7 +_pickle.cpython-35m-darwin.so (???) <4AEB8BED-7634-32AA-9CC6-9E728F5D6210> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_pickle.cpython-35m-darwin.so
0x103308000 - 0x103335fef +_lzma.cpython-35m-darwin.so (???) <3F1F8649-FE84-F219-6166-BD98B4D25FFA> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_lzma.cpython-35m-darwin.so
0x1033bf000 - 0x1033d2fff +_umath_linalg.cpython-35m-darwin.so (0) <E7A055F2-5C2D-3887-9982-9B51159B89C5> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/numpy/linalg/_umath_linalg.cpython-35m-darwin.so
0x1033df000 - 0x1033e7fff +fftpack_lite.cpython-35m-darwin.so (0) <B3714E06-6AD1-3059-A344-69864B4174DB> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/numpy/fft/fftpack_lite.cpython-35m-darwin.so
0x1033eb000 - 0x1033f1ff7 +libOpenMMRPMDReference.dylib (0) <481F0191-0277-3B26-A88E-D9DADBF6C903> /usr/local/openmm/lib/plugins/libOpenMMRPMDReference.dylib
0x1033f6000 - 0x1033fafff +zlib.cpython-35m-darwin.so (???) <CFB85B77-DEDD-5AAB-3FA4-32F7E03F336D> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/zlib.cpython-35m-darwin.so
0x1035c0000 - 0x10361ffff +mtrand.cpython-35m-darwin.so (0) <B691EEC6-97D3-306A-9E91-606A4E1CE112> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/numpy/random/mtrand.cpython-35m-darwin.so
0x103940000 - 0x103988fe7 +libOpenMMCPU.dylib (0) <6C9E28AE-D661-36AC-BA58-85292160B722> /usr/local/openmm/lib/plugins/libOpenMMCPU.dylib
0x1039a8000 - 0x103b3ffff +libOpenMMOpenCL.dylib (0) <26803F4B-FFCB-3C57-8B93-98BF113D9BBF> /usr/local/openmm/lib/plugins/libOpenMMOpenCL.dylib
0x103b86000 - 0x103e20ff3 com.apple.security (7.0 - 57337.60.2) <E2E553E7-28C4-3296-B3B6-BB1B3CA73943> /System/Library/Frameworks/Security.framework/Versions/A/Security
0x103fa0000 - 0x104227fff com.apple.CFNetwork (760.6.3 - 760.6.3) <8CB9CB2E-D0FB-31D4-A1AE-2A5FE028AD6B> /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
0x104429000 - 0x10443dff7 +libOpenMMRPMDOpenCL.dylib (0) <6E0972A0-AAE5-3069-871D-CA2C6E9B597E> /usr/local/openmm/lib/plugins/libOpenMMRPMDOpenCL.dylib
0x104446000 - 0x104455fff +libOpenMMDrudeOpenCL.dylib (0) <EE2EF10D-380B-30D4-883C-DAAAA5F488AC> /usr/local/openmm/lib/plugins/libOpenMMDrudeOpenCL.dylib
0x10445d000 - 0x104465fff +libOpenMMDrudeReference.dylib (0) <9A3425F4-6D8B-370B-9285-E234408F6737> /usr/local/openmm/lib/plugins/libOpenMMDrudeReference.dylib
0x10446b000 - 0x1044b9ff7 +libOpenMMAmoebaReference.dylib (0) <B1FCF8FB-A077-333E-9C48-EF5416F98D53> /usr/local/openmm/lib/plugins/libOpenMMAmoebaReference.dylib
0x1044d9000 - 0x1044e2fff +_elementtree.cpython-35m-darwin.so (???) <82886362-3207-C63E-E73B-F75C270C113F> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/_elementtree.cpython-35m-darwin.so
0x1044eb000 - 0x104520fff +pyexpat.cpython-35m-darwin.so (???) <A0AAAF05-FE8D-822D-C4EE-1FB6EB9E5166> /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/lib-dynload/pyexpat.cpython-35m-darwin.so
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0x7fff9817b000 - 0x7fff981f0fff com.apple.framework.IOKit (2.0.2 - 1179.50.2) <A509D3AE-9D48-31B7-89C7-326A7A2007B2> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x7fff981f1000 - 0x7fff981fcfff libGL.dylib (12.1) <70D51643-04AC-3400-8F11-A6FC25985289> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff981fd000 - 0x7fff9826bff7 com.apple.ApplicationServices.ATS (377 - 394.4) <9779E916-0788-3CAC-B1EC-F68BCB12A2B6> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
0x7fff982a9000 - 0x7fff983a5ff7 libFontParser.dylib (158.6) <267A9AE4-4138-3112-8D73-BDFDC96568FF> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib
0x7fff983d0000 - 0x7fff983ecff3 libresolv.9.dylib (60) <A650B5C8-1950-36A0-86D1-0B2465318BFA> /usr/lib/libresolv.9.dylib
0x7fff98405000 - 0x7fff9841bff7 libLinearAlgebra.dylib (1162.2) <FFE54EDF-F06F-3C0A-864A-4CA7BBFD4B2D> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLinearAlgebra.dylib
0x7fff984df000 - 0x7fff985b5ffb com.apple.DiskImagesFramework (10.11.4 - 417.4) <B9525D22-6F0D-39C5-BA9B-9DF195FE1968> /System/Library/PrivateFrameworks/DiskImages.framework/Versions/A/DiskImages
0x7fff985b6000 - 0x7fff985bdff7 libcompiler_rt.dylib (62) <A13ECF69-F59F-38AE-8609-7B731450FBCD> /usr/lib/system/libcompiler_rt.dylib
0x7fff985c1000 - 0x7fff985c9fff com.apple.NetFS (6.0 - 4.0) <842A5346-24C3-3F22-9ECF-E586A10EA1F2> /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS
0x7fff985ca000 - 0x7fff98935657 libobjc.A.dylib (680) <D55D5807-1FBE-32A5-9105-44D7AFE68C27> /usr/lib/libobjc.A.dylib
0x7fff9908f000 - 0x7fff990c6ff7 com.apple.LDAPFramework (2.4.28 - 194.5) <9AE33BF2-FB17-342D-8F1E-5F83C6E6EB69> /System/Library/Frameworks/LDAP.framework/Versions/A/LDAP
0x7fff99439000 - 0x7fff9948afff com.apple.audio.CoreAudio (4.3.0 - 4.3.0) <EA7D4F3B-062B-3C81-A98C-C89264D00D48> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x7fff994f8000 - 0x7fff994fbffb libdyld.dylib (360.22) <25D28225-99AE-3A04-B98C-ACFF47D6D9B0> /usr/lib/system/libdyld.dylib
0x7fff99628000 - 0x7fff99666ff7 libGLImage.dylib (12.1) <BB1F1A93-5101-3906-AB17-8D83FCB200F9> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff99667000 - 0x7fff99675fff com.apple.opengl (12.1.0 - 12.1.0) <0718DB60-BA4F-3CF7-A117-10A2515D931F> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff996d7000 - 0x7fff996e0ff7 libsystem_pthread.dylib (138.10.4) <3DD1EF4C-1D1B-3ABF-8CC6-B3B1CEEE9559> /usr/lib/system/libsystem_pthread.dylib
0x7fff996e1000 - 0x7fff99726ff7 com.apple.coreservices.SharedFileList (24.4 - 24.5) <1D2AD77B-778F-3253-A295-3D0A32A8121C> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList
0x7fff99727000 - 0x7fff99f85fff com.apple.GeForceGLDriver (10.10.13 - 10.1.0) <19B84809-1C0E-320D-99FD-A8C22351375F> /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/GeForceGLDriver
0x7fff9a1d2000 - 0x7fff9a1d6fff libGIF.dylib (1459) <58F85C45-96D2-3713-A8C0-B2579B419A80> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
0x7fff9a1d7000 - 0x7fff9a1dffef libcldcpuengine.dylib (2.7.3) <385BE8CE-16D8-3FCB-8558-8EB744D3DFE6> /System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries/libcldcpuengine.dylib
0x7fff9a6f4000 - 0x7fff9a6fffff libkxld.dylib (3248.60.11) <9F422A08-0212-36E1-BFF8-1491C70EBFCA> /usr/lib/system/libkxld.dylib
0x7fff9a700000 - 0x7fff9a71afff com.apple.Kerberos (3.0 - 1) <1B4744BF-E5AE-38E2-AA56-E22D3270F2E8> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x7fff9a75f000 - 0x7fff9a75ffff com.apple.ApplicationServices (48 - 48) <ADD57D3A-142F-3EF5-BFD8-EACD82164884> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x7fff9a937000 - 0x7fff9a93bfff libcache.dylib (75) <9548AAE9-2AB7-3525-9ECE-A2A7C4688447> /usr/lib/system/libcache.dylib
0x7fff9aa16000 - 0x7fff9aa85fff com.apple.SearchKit (1.4.0 - 1.4.0) <F159A888-34CA-36F1-AC8E-EB1B38C9DFB3> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
0x7fff9aca1000 - 0x7fff9acbfff7 libsystem_kernel.dylib (3248.60.11) <A3F069EA-6A41-35CA-BDF8-187E0209B3E2> /usr/lib/system/libsystem_kernel.dylib
0x7fff9acf3000 - 0x7fff9ad34ff7 libGLU.dylib (12.1) <CD7A5916-3E3C-3EF3-A275-B281016B99CB> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff9adcf000 - 0x7fff9add7fff com.apple.frameworks.CoreDaemon (1.3 - 1.3) <CC53DC12-9231-3C4F-921B-9A770D463323> /System/Library/PrivateFrameworks/CoreDaemon.framework/Versions/B/CoreDaemon
0x7fff9adeb000 - 0x7fff9ae78fef libsystem_c.dylib (1082.60.1) <28733D22-553E-3CBC-8D2C-EDCEB46E46AF> /usr/lib/system/libsystem_c.dylib
0x7fff9ae83000 - 0x7fff9af23fff com.apple.Metadata (10.7.0 - 972.34) <A58195C5-5D5C-32D5-8BBB-F4D32201E5AA> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
0x7fff9b1db000 - 0x7fff9b295fff com.apple.DiscRecording (9.0.1 - 9010.4.3) <540853B2-B123-3560-8023-C92EE229051A> /System/Library/Frameworks/DiscRecording.framework/Versions/A/DiscRecording
0x7fff9b296000 - 0x7fff9b2a7fff libcmph.dylib (6) <BA4BF2C6-7F4E-33B8-9DD7-619C9EB83ECF> /usr/lib/libcmph.dylib
0x7fff9bb15000 - 0x7fff9bb26ff7 libz.1.dylib (61.20.1) <B3EBB42F-48E3-3287-9F0D-308E04D407AC> /usr/lib/libz.1.dylib
0x7fff9bbf5000 - 0x7fff9c485ff7 libclh.dylib (4.0.3 - 4.0.3) <83A8F9FD-6AAB-30CB-9BB5-6E5CA11EDA88> /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/libclh.dylib
0x7fff9c643000 - 0x7fff9c651ff7 libbz2.1.0.dylib (38) <28E54258-C0FE-38D4-AB76-1734CACCB344> /usr/lib/libbz2.1.0.dylib
0x7fff9c652000 - 0x7fff9c65afff com.apple.CoreServices.FSEvents (1223.10.1 - 1223.10.1) <7F5B7A23-BC1D-3FA9-A9B8-D534F1E1979A> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/FSEvents.framework/Versions/A/FSEvents
0x7fff9c730000 - 0x7fff9cba6fff com.apple.CoreFoundation (6.9 - 1258.1) <943A1383-DA6A-3DC0-ABCD-D9AEB3D0D34D> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff9cdb7000 - 0x7fff9d10bfff com.apple.Foundation (6.9 - 1259) <71A9D3A0-0B1F-3E3A-86F3-1486365A6EF2> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x7fff9d3d6000 - 0x7fff9d465ff7 libCoreStorage.dylib (517.50.1) <E6283FE9-B5AC-3110-8D4C-8E2BF185983E> /usr/lib/libCoreStorage.dylib
0x7fff9d7f9000 - 0x7fff9d7faffb libremovefile.dylib (41) <552EF39E-14D7-363E-9059-4565AC2F894E> /usr/lib/system/libremovefile.dylib
0x7fff9d90d000 - 0x7fff9d90fff7 com.apple.xpc.ServiceManagement (1.0 - 1) <D96D7A6D-EDEB-35EE-B5D9-E33A3BF011B5> /System/Library/Frameworks/ServiceManagement.framework/Versions/A/ServiceManagement
0x7fff9d91b000 - 0x7fff9d970fff com.apple.AE (701 - 701) <AD492742-F884-386B-A450-FAC281B9FFA4> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
0x7fff9dac0000 - 0x7fff9dad7ff7 libsystem_coretls.dylib (83.40.5) <C90DAE38-4082-381C-A185-2A6A8B677628> /usr/lib/system/libsystem_coretls.dylib
0x7fff9dd04000 - 0x7fff9dd91dd7 com.apple.AppleJPEG (1.0 - 1) <BF7EDBDB-A52D-37F7-BDE4-EAD49310D7A9> /System/Library/PrivateFrameworks/AppleJPEG.framework/Versions/A/AppleJPEG
0x7fff9ddab000 - 0x7fff9ddbdfff libsasl2.2.dylib (209) <11C7D200-0CA5-30F4-A19A-178CA81D48FE> /usr/lib/libsasl2.2.dylib
0x7fff9ddf2000 - 0x7fff9ddfbff3 libsystem_notify.dylib (150.40.1) <D48BDE34-0F7E-34CA-A0FF-C578E39987CC> /usr/lib/system/libsystem_notify.dylib
0x7fff9ddfc000 - 0x7fff9de4fff7 libc++.1.dylib (120.1) <8FC3D139-8055-3498-9AC5-6467CB7F4D14> /usr/lib/libc++.1.dylib
0x7fff9de50000 - 0x7fff9de92ff7 com.apple.Metal (56.6 - 56.6) <30518711-8D00-3759-AA19-800D3C88E693> /System/Library/Frameworks/Metal.framework/Versions/A/Metal
0x7fff9e0d5000 - 0x7fff9e0dafff com.apple.TCC (1.0 - 1) <F5EEB2D3-9517-3975-97BE-22CB8E11B8A3> /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
0x7fff9e0db000 - 0x7fff9e0dbfff libmetal_timestamp.dylib (600.0.44.2) <DEEA1127-7A5D-3EF2-A4B2-AE125CBA5DB5> /System/Library/PrivateFrameworks/GPUCompiler.framework/libmetal_timestamp.dylib
0x7fff9e0dc000 - 0x7fff9e0f5fe7 libcompression.dylib (28) <F83F421D-115D-3457-A9AA-1BEB5070A30B> /usr/lib/libcompression.dylib
0x7fff9e0f6000 - 0x7fff9e0f7fff libsystem_secinit.dylib (20) <32B1A8C6-DC84-3F4F-B8CE-9A52B47C3E6B> /usr/lib/system/libsystem_secinit.dylib
0x7fff9e4bc000 - 0x7fff9e4bfff7 libCoreFSCache.dylib (119.5) <2389D7DA-B8EF-3EB4-AAAF-FBEDE01CDECA> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff9e4c0000 - 0x7fff9e4efffb libsystem_m.dylib (3105) <08E1A4B2-6448-3DFE-A58C-ACC7335BE7E4> /usr/lib/system/libsystem_m.dylib
0x7fff9e75c000 - 0x7fff9e780fff com.apple.MultitouchSupport.framework (304.12 - 304.12) <65CB7653-EACD-3ADB-ABB6-2E0671708301> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
0x7fff9e781000 - 0x7fff9e7b4ff7 com.apple.MediaKit (16 - 809) <BF8032FE-6645-37F6-A622-BC7EEE3EAABF> /System/Library/PrivateFrameworks/MediaKit.framework/Versions/A/MediaKit
0x7fff9e95b000 - 0x7fff9e95cfff libDiagnosticMessagesClient.dylib (100) <4243B6B4-21E9-355B-9C5A-95A216233B96> /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff9e98e000 - 0x7fff9eaabfff libsqlite3.dylib (216.4) <DC3D59E7-91A3-374F-957C-6699729CD82B> /usr/lib/libsqlite3.dylib
0x7fff9eaac000 - 0x7fff9eb12ff7 libsystem_network.dylib (583.50.1) <B52DAB73-92DC-3DA7-B9F4-B899D66445C1> /usr/lib/system/libsystem_network.dylib
0x7fff9edc3000 - 0x7fff9ef83ffb libBLAS.dylib (1162.2) <B4C21826-5EB3-3C6D-B75D-CA4886E2B6A6> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x7fff9effa000 - 0x7fff9effaff7 libkeymgr.dylib (28) <8371CE54-5FDD-3CE9-B3DF-E98C761B6FE0> /usr/lib/system/libkeymgr.dylib
0x7fff9effb000 - 0x7fff9effdfff com.apple.EFILogin (2.0 - 2) <38150198-DD7F-3C73-BCAA-C74BB376393A> /System/Library/PrivateFrameworks/EFILogin.framework/Versions/A/EFILogin
0x7fff9f085000 - 0x7fff9f0aefff libsystem_info.dylib (477.50.4) <FAA9226D-64DE-3769-A6D8-6CABA4B7FF4D> /usr/lib/system/libsystem_info.dylib
0x7fff9f0b4000 - 0x7fff9f572fcf com.apple.vImage (8.0 - 8.0) <85FB412E-EB30-3433-A79B-B3970FC83580> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x7fff9fc5d000 - 0x7fff9ff42ffb com.apple.CoreServices.CarbonCore (1136.2 - 1136.2) <2DBAFC9A-6CD6-351D-B1F4-87D81AA6D640> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x7fff9ff43000 - 0x7fff9ff49fff com.apple.IOAccelerator (205.11 - 205.11) <C51BF724-F8E8-3B9F-806E-A00C65056445> /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator
0x7fff9ff92000 - 0x7fff9ffa2fff libbsm.0.dylib (34) <7E14504C-A8B0-3574-B6EB-5D5FABC72926> /usr/lib/libbsm.0.dylib
0x7fff9ffa3000 - 0x7fff9ffb1fff libxar.1.dylib (302) <03207F66-2C4A-3DBD-8D81-70F4C85903C4> /usr/lib/libxar.1.dylib

External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 397466
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=217.9M resident=0K(0%) swapped_out_or_unallocated=217.9M(100%)
Writable regions: Total=180.9M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=180.9M(100%)

VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Activity Tracing 2048K 2
CG shared images 144K 5
Dispatch continuations 16.0M 2
Kernel Alloc Once 4K 2
MALLOC 105.0M 69
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 512K 4 reserved VM address space (unallocated)
OpenCL 30.5M 12
OpenCL (reserved) 560K 3 reserved VM address space (unallocated)
Process Corpse Info 2048K 2
STACK GUARD 64K 17
Stack 7872K 17
VM_ALLOCATE 48K 8
__DATA 20.3M 211
__GLSLBUILTINS 2588K 2
__LINKEDIT 98.7M 41
__TEXT 119.3M 204
__UNICODE 552K 2
__UNIXSTACK 16.0M 2
mapped file 25.1M 2
shared memory 28K 6
=========== ======= =======
TOTAL 447.1M 600
TOTAL, minus reserved VM space 446.0M 600

Model: iMac13,2, BootROM IM131.010A.B09, 4 processors, Intel Core i7, 3.4 GHz, 32 GB, SMC 2.11f16
Graphics: NVIDIA GeForce GTX 680MX, NVIDIA GeForce GTX 680MX, PCIe, 2048 MB
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 0/DIMM1, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
Memory Module: BANK 1/DIMM1, 8 GB, DDR3, 1600 MHz, 0x85F7, 0x483634314755363747313630304700000000
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xF4), Broadcom BCM43xx 1.0 (7.21.95.175.1a6)
Bluetooth: Version 4.4.6f1 17910, 3 services, 27 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Serial ATA Device: APPLE HDD ST3000DM001, 3 TB
Serial ATA Device: APPLE SSD SM128E, 121.33 GB
USB Device: USB 2.0 Bus
USB Device: Hub
USB Device: Hub
USB Device: Rift DK2
USB Device: FaceTime HD Camera (Built-in)
USB Device: USB 2.0 Bus
USB Device: Hub
USB Device: Hub
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
USB Device: USB 3.0 Bus
USB Device: BUP Fast HDD
USB Device: Kinesis Keyboard Hub
USB Device: Composite Device
USB Device: Composite Device
Thunderbolt Bus: iMac, Apple Inc., 23.4

Add A Comment: Notepad

Comments:

Message  ↓
Date: 2016-09-16 17:24
Sender: Tom Goddard

The simulatePDB.py example does work with the CPU platform.

Attached Files:

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