How Robust is Human Gait to Calf Muscle Shortening?

Provides the models and simulation results for
testing the sensitivity of gait to progressive
calf muscle shortening.
New followers: 1

Automated Scaling Tool (AST) for generic MSK models

The Automated Scaling Tool (AST) is a MATLAB
script that utilizes the OpenSim API to automate
the OpenSim Scaling process.
New download files: 1

Sprint Hurdling

Looking to create a visualization of muscular
activity in sprint hurdling in regards to the
sport of track and field.
Forum posts last week: 1

rundfunk

Modification of muscle path nalysis using motion
capture data
Forum posts last week: 1

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 353
Total downloads: 177,192

OpenSim Moco

OpenSim Moco solves optimal control problems with
musculoskeletal models defined in OpenSim, using
direct collocation.
Forum posts last week: 3

Molecular dynamics model of the apo human AT1R

AT1R Model preparation The crystal structure of
human AT1R bound to olmesartan (PDB: 4ZUD) was
downloaded from the RCSB Protein Data Bank. 4ZUD
contains apocytochrome b562RIL fused to the amino
terminus, and many of the flexible regions, as
well as helix
Forum posts last week: 1

Critical Point Analysis on Networks

1) provide an easy and natural definition of
critical points on networks; 2) provide matlab
codes for finding critical nodes on networks with
examples from social and protein-ligand binding
transition network
Forum posts last week: 1

Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 194
Total downloads: 39,672

OpenMM Zephyr

OpenMM Zephyr provides a visual application for
running GPU-accelerated molecular simulations.
Downloads last week: 248
Total downloads: 1,098,597

Closed loop simulation of a human-exoskeleton and kinetic and kinematic modeling

This project attempts to tackle some of the
challenges in developing an exoskeleton device
using simulation methods. in this project, the
closed loop simulation of a human exoskeleton is
performed .In this study, a simulation-based
method is presented for the designing and analysis
of the parameters of an exoskeleton and its
wearer’s kinetics and kinematics. Model-based
design software, including OpenSim and Inventor,
and mathematical software, such as MATLAB, are
integrated. This method can assist in the
modification of exoskeleton devices and allow
physiologists, and physical therapists to
generate new solutions for rehabilitation programs
using exoskeletons.
Downloads last week: 50

Design and Validation of Insoles Using OpenSim and Other Analyses

　 1) Study how gait patterns of
flat/high-arched foot are different from those of
normal foot using OpenSim and other analyses 2)
Study how insole parameters affect gait
patterns 3) Suggest suitable insole parameters to
flat/high-arched foot
New followers: 1

Thoracolumbar spine and rib cage model in OpenSim

The aim of this project is to provide detailed and
well-validated musculoskeletal models of the
thoracolumbar spine and rib cage, particularly for
investigators with an interest studying
musculoskeletal loading in the trunk.
Total followers: 39

Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Open Knee(s) goals have been to provide free
access to three-dimensional finite element
representations of the knee joint and promote open
development of knee models for collaborative
testing and use. <B>Definitive Guide to
Project and Its Outcomes</B> Open Knee(s): A
Free and Open Source Library of Specimen-Specific
Models and Related Digital Assets for Finite
Element Analysis of the Knee Joint. Chokhandre S,
Schwartz A, Klonowski E, Landis B, Erdemir A. Ann
Biomed Eng. 2023 Jan;51(1):10-23. (<A
HREF="https://doi.org/10.1007/s10439-022-0307
4-0">https://doi.org/10.1007/s10439-022-03
074-0</A>) <B>Definitive Guide to
Open Knee(s) Data</B> Specimen specific
imaging and joint mechanical testing data for next
generation virtual knees. Chokhandre S, Neumann
EE, Nagle TF, Colbrunn RW, Flask CA, Colak C,
Halloran J, Erdemir A. Data Brief. 2021 Jan
30;35:106824. (<A
HREF="https://doi.org/10.1016/j.dib.2021.1068
24">https://doi.org/10.1016/j.dib.2021.106
824</A>) <B>Database of Open
Knee(s) Models</B> Under Downloads ->
Data Share -> View -> OKS_models and at
(<A
HREF="https://doi.org/10.18735/b0zv-n395"
;>https://doi.org/10.18735/b0zv-n395</A>)
<B>Database of Open Knee(s)
Data</B> Growing version under Downloads
-> Data Share -> View -> Open Knees Data;
permanent static version at (<A
HREF="https://doi.org/10.18735/4e78-1311"
;>https://doi.org/10.18735/4e78-1311</A>)
Downloads last week: 640
Total followers: 45
Total downloads: 134,127

OpenSim

Provide easy-to-use, extensible software for
modeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 1,706
Forum posts last week: 21
Total followers: 312
New followers: 1
Total downloads: 746,759