Protein.h File Reference

#include "molmodel/internal/common.h"
#include "molmodel/internal/Compound.h"
#include "molmodel/internal/CompoundSystem.h"

Go to the source code of this file.

Classes
class	SimTK::AcetylResidue
	Widely used acetyl protein N-terminal end cap. More...
class	SimTK::NMethylAmideResidue
	Neutral C-terminal protein cap. More...
class	SimTK::AminoAcidResidue
	amino acid residue building block for protein polypeptide chain molecules More...
class	SimTK::AminoAcidResidue::HNAminoAcidResidue
	AminoAcidResidue differs from HNAminoAcidResidue in lacking "HN" proton, so Proline can be derived. More...
class	SimTK::AminoAcidResidue::BetaUnbranchedAminoAcidResidue
class	SimTK::AminoAcidResidue::BetaBranchedAminoAcidResidue
class	SimTK::AminoAcidResidue::Alanine
class	SimTK::AminoAcidResidue::Cysteine
class	SimTK::AminoAcidResidue::Aspartate
class	SimTK::AminoAcidResidue::Glutamate
class	SimTK::AminoAcidResidue::Phenylalanine
class	SimTK::AminoAcidResidue::Glycine
class	SimTK::AminoAcidResidue::Histidine
class	SimTK::AminoAcidResidue::Isoleucine
class	SimTK::AminoAcidResidue::Lysine
class	SimTK::AminoAcidResidue::Leucine
class	SimTK::AminoAcidResidue::Methionine
class	SimTK::AminoAcidResidue::Asparagine
class	SimTK::AminoAcidResidue::Proline
class	SimTK::AminoAcidResidue::Glutamine
class	SimTK::AminoAcidResidue::Arginine
class	SimTK::AminoAcidResidue::Serine
class	SimTK::AminoAcidResidue::Threonine
class	SimTK::AminoAcidResidue::Valine
class	SimTK::AminoAcidResidue::Tryptophan
class	SimTK::AminoAcidResidue::Tyrosine
class	SimTK::Protein
Namespaces
namespace	SimTK
Variables
static const Angle	SimTK::DefaultAlphaPhiAngle = -57 * Deg2Rad
static const Angle	SimTK::DefaultAlphaPsiAngle = -47 * Deg2Rad
static const Angle	SimTK::DefaultParallelBetaPhiAngle = -119 * Deg2Rad
static const Angle	SimTK::DefaultParallelBetaPsiAngle = 113 * Deg2Rad
static const Angle	SimTK::DefaultAntiparallelBetaPhiAngle = -139 * Deg2Rad
static const Angle	SimTK::DefaultAntiparallelBetaPsiAngle = 135 * Deg2Rad