Molmodel

SimTK::AtomSubsystem Member List

This is the complete list of members for SimTK::AtomSubsystem, including all inherited members.
addAtom(mass_t mass=0.0 *daltons)SimTK::AtomSubsystem
addBodyExclusion(MobilizedBodyIndex bodyIx1, MobilizedBodyIndex bodyIx2)SimTK::AtomSubsystem
addBond(AtomIndex a1, AtomIndex a2)SimTK::AtomSubsystem
adoptMeasure(AbstractMeasure &)SimTK::Subsystem
adoptSubsystemGuts(Subsystem::Guts *g)SimTK::Subsystem
allocateAutoUpdateDiscreteVariable(State &, Stage invalidates, AbstractValue *v, Stage updateDependsOn) const SimTK::Subsystem
allocateCacheEntry(const State &, Stage dependsOn, Stage computedBy, AbstractValue *v) const SimTK::Subsystem
allocateCacheEntry(const State &state, Stage g, AbstractValue *v) const SimTK::Subsystem
allocateDiscreteVariable(State &, Stage invalidates, AbstractValue *v) const SimTK::Subsystem
allocateEventTriggersByStage(const State &, Stage, int ntriggers) const SimTK::Subsystem
allocateLazyCacheEntry(const State &state, Stage earliest, AbstractValue *v) const SimTK::Subsystem
allocateQ(State &, const Vector &qInit) const SimTK::Subsystem
allocateQErr(const State &, int nqerr) const SimTK::Subsystem
allocateU(State &, const Vector &uInit) const SimTK::Subsystem
allocateUDotErr(const State &, int nudoterr) const SimTK::Subsystem
allocateUErr(const State &, int nuerr) const SimTK::Subsystem
allocateZ(State &, const Vector &zInit) const SimTK::Subsystem
area_t typedefSimTK::AtomSubsystem
AtomicBodies typedefSimTK::AtomSubsystem
AtomIndexList typedefSimTK::AtomSubsystem
AtomSubsystem(SimTK::MultibodySystem &system)SimTK::AtomSubsystem [explicit]
AUTOMATIC enum valueSimTK::AtomSubsystem
getAtom(AtomIndex ix) const SimTK::AtomSubsystem
getAtomBodyStationInGround(const SimTK::State &state, AtomIndex atom) const SimTK::AtomSubsystem
getAtomLocationInGround(const SimTK::State &state, AtomIndex atom) const SimTK::AtomSubsystem
getAtomVelocityInGround(const SimTK::State &state, AtomIndex atom) const SimTK::AtomSubsystem
getBodyAtoms(LocalBodyIndex bodyIx) const SimTK::AtomSubsystem
getBodyAtoms(SimTK::MobilizedBodyIndex bodyIx) const SimTK::AtomSubsystem
getBond(BondIndex ix) const SimTK::AtomSubsystem
getCacheEntry(const State &, CacheEntryIndex) const SimTK::Subsystem
getDiscreteVariable(const State &s, DiscreteVariableIndex dx) const SimTK::Subsystem
getDiscreteVarLastUpdateTime(const State &s, DiscreteVariableIndex dx) const SimTK::Subsystem
getDiscreteVarUpdateIndex(const State &s, DiscreteVariableIndex dx) const SimTK::Subsystem
getDiscreteVarUpdateValue(const State &s, DiscreteVariableIndex dx) const SimTK::Subsystem
getEventTriggersByStage(const State &, Stage) const SimTK::Subsystem
getEventTriggerStartByStage(const State &, Stage) const SimTK::Subsystem
getMeasure(MeasureIndex) const SimTK::Subsystem
getMeasure_(MeasureIndex mx) const SimTK::Subsystem
getMultibodySystem() const SimTK::AtomSubsystem
getMultipliers(const State &) const SimTK::Subsystem
getMultipliersStart(const State &) const SimTK::Subsystem
getMySubsystemIndex() const SimTK::Subsystem
getName() const SimTK::Subsystem
getNEventTriggersByStage(const State &, Stage) const SimTK::Subsystem
getNMultipliers(const State &) const SimTK::Subsystem
getNQ(const State &) const SimTK::Subsystem
getNQErr(const State &) const SimTK::Subsystem
getNU(const State &) const SimTK::Subsystem
getNUDotErr(const State &) const SimTK::Subsystem
getNUErr(const State &) const SimTK::Subsystem
getNumAtoms() const SimTK::AtomSubsystem
getNumBodies() const SimTK::AtomSubsystem
getNumBonds() const SimTK::AtomSubsystem
getNZ(const State &) const SimTK::Subsystem
getQ(const State &) const SimTK::Subsystem
getQDot(const State &) const SimTK::Subsystem
getQDotDot(const State &) const SimTK::Subsystem
getQErr(const State &) const SimTK::Subsystem
getQErrStart(const State &) const SimTK::Subsystem
getQStart(const State &) const SimTK::Subsystem
getRep() const SimTK::AtomSubsystem [protected]
getStage(const State &) const SimTK::Subsystem
getSubsystemGuts() const SimTK::Subsystem
getSystem() const SimTK::Subsystem
getU(const State &) const SimTK::Subsystem
getUDot(const State &) const SimTK::Subsystem
getUDotErr(const State &) const SimTK::Subsystem
getUDotErrStart(const State &) const SimTK::Subsystem
getUErr(const State &) const SimTK::Subsystem
getUErrStart(const State &) const SimTK::Subsystem
getUStart(const State &) const SimTK::Subsystem
getVersion() const SimTK::Subsystem
getZ(const State &) const SimTK::Subsystem
getZDot(const State &) const SimTK::Subsystem
getZStart(const State &) const SimTK::Subsystem
GutsSimTK::Subsystem [friend]
hasGuts() const SimTK::Subsystem
invalidateSubsystemTopologyCache() const SimTK::Subsystem
isCacheValueRealized(const State &, CacheEntryIndex) const SimTK::Subsystem
isDiscreteVarUpdateValueRealized(const State &s, DiscreteVariableIndex dx) const SimTK::Subsystem
isEmptyHandle() const SimTK::Subsystem
isInSameSystem(const Subsystem &otherSubsystem) const SimTK::Subsystem
isInSystem() const SimTK::Subsystem
isOwnerHandle() const SimTK::Subsystem
isSameSubsystem(const Subsystem &otherSubsystem) const SimTK::Subsystem
length_t typedefSimTK::AtomSubsystem
location_t typedefSimTK::AtomSubsystem
markCacheValueNotRealized(const State &, CacheEntryIndex) const SimTK::Subsystem
markCacheValueRealized(const State &, CacheEntryIndex) const SimTK::Subsystem
markDiscreteVarUpdateValueRealized(const State &s, DiscreteVariableIndex dx) const SimTK::Subsystem
mass_t typedefSimTK::AtomSubsystem
N_SQUARED enum valueSimTK::AtomSubsystem
NeighborAlgorithm enum nameSimTK::AtomSubsystem
operator=(const Subsystem &)SimTK::Subsystem
pairBegin(const State &state, length_t cutoff=0.0 *nanometers, NeighborAlgorithm algorithm=AUTOMATIC) const SimTK::AtomSubsystem
pairEnd() const SimTK::AtomSubsystem
setAtomMobilizedBodyIndex(AtomIndex atomIx, MobilizedBodyIndex bodyIx)SimTK::AtomSubsystem
setQ(State &s, const Vector &q) const SimTK::Subsystem
setSystem(System &, SubsystemIndex)SimTK::Subsystem
setU(State &s, const Vector &u) const SimTK::Subsystem
setZ(State &s, const Vector &z) const SimTK::Subsystem
SimTK_DEFINE_UNIQUE_LOCAL_INDEX_TYPE(AtomSubsystem, AtomIndex)SimTK::AtomSubsystem
SimTK_DEFINE_UNIQUE_LOCAL_INDEX_TYPE(AtomSubsystem, BodyAtomIndex)SimTK::AtomSubsystem
SimTK_DEFINE_UNIQUE_LOCAL_INDEX_TYPE(AtomSubsystem, LocalBodyIndex)SimTK::AtomSubsystem
SimTK_DEFINE_UNIQUE_LOCAL_INDEX_TYPE(AtomSubsystem, BondIndex)SimTK::AtomSubsystem
Subsystem()SimTK::Subsystem
Subsystem(const Subsystem &)SimTK::Subsystem
Subsystem(Subsystem::Guts *g)SimTK::Subsystem
subsystemTopologyHasBeenRealized() const SimTK::Subsystem
updAtom(AtomIndex ix)SimTK::AtomSubsystem
updBond(BondIndex ix)SimTK::AtomSubsystem
updCacheEntry(const State &, CacheEntryIndex) const SimTK::Subsystem
updDiscreteVariable(State &, DiscreteVariableIndex) const SimTK::Subsystem
updDiscreteVarUpdateValue(const State &s, DiscreteVariableIndex dx) const SimTK::Subsystem
updEventTriggersByStage(const State &, Stage) const SimTK::Subsystem
updMatterSubsystem()SimTK::AtomSubsystem
updMultibodySystem()SimTK::AtomSubsystem
updMultipliers(const State &) const SimTK::Subsystem
updQ(State &) const SimTK::Subsystem
updQDot(const State &) const SimTK::Subsystem
updQDotDot(const State &) const SimTK::Subsystem
updQErr(const State &) const SimTK::Subsystem
updRep()SimTK::AtomSubsystem [protected]
updSubsystemGuts()SimTK::Subsystem
updSystem()SimTK::Subsystem
updU(State &) const SimTK::Subsystem
updUDot(const State &) const SimTK::Subsystem
updUDotErr(const State &) const SimTK::Subsystem
updUErr(const State &) const SimTK::Subsystem
updZ(State &) const SimTK::Subsystem
updZDot(const State &) const SimTK::Subsystem
VOXEL_HASH enum valueSimTK::AtomSubsystem
~Subsystem()SimTK::Subsystem
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