Molmodel

SimTK::VanDerWaalsForce Member List

This is the complete list of members for SimTK::VanDerWaalsForce, including all inherited members.
addAtom(AtomSubsystem::AtomIndex atomIndex, length_t rMin, energy_t wellDepth)SimTK::VanDerWaalsForce [inline]
addBoundarySphere(const location_t &center, length_t radius, length_t vdwRadius, energy_t wellDepth)SimTK::VanDerWaalsForce [inline]
area_t typedefSimTK::VanDerWaalsForce
AtomIndex typedefSimTK::VanDerWaalsForce
atomSubsystemSimTK::VanDerWaalsForce [protected]
calcForce(const State &state, Vector_< SpatialVec > &bodyForces, Vector_< Vec3 > &particleForces, Vector &mobilityForces) const SimTK::VanDerWaalsForce [inline, virtual]
calcForce(const VdwAtom &vdwAtom1, const VdwAtom &vdwAtom2, const State &state, Vector_< SpatialVec > &bodyForces) const SimTK::VanDerWaalsForce [inline, protected]
calcForce(const WallSphere &sphere, const VdwAtom &vdwAtom2, const State &state, Vector_< SpatialVec > &bodyForces) const SimTK::VanDerWaalsForce [inline, protected]
calcForceAndEnergy(const location_t &r, Real dij, Real eij) const SimTK::VanDerWaalsForce [inline, protected]
calcPotentialEnergy(const State &state) const SimTK::VanDerWaalsForce [inline, virtual]
calcPotentialEnergy(const VdwAtom &vdwAtom1, const VdwAtom &vdwAtom2, const State &state) const SimTK::VanDerWaalsForce [inline, protected]
calcPotentialEnergy(const WallSphere &sphere, const VdwAtom &vdwAtom2, const State &state) const SimTK::VanDerWaalsForce [inline, protected]
cutoffSimTK::VanDerWaalsForce [protected]
cutoffSquaredSimTK::VanDerWaalsForce [protected]
decorateAtoms(DecorationSubsystem &decorations, Real scale=1.0) const SimTK::VanDerWaalsForce [inline]
decorateBoundingSpheres(DecorationSubsystem &decorations) const SimTK::VanDerWaalsForce [inline]
dependsOnlyOnPositions() const SimTK::VanDerWaalsForce [inline, virtual]
energy_t typedefSimTK::VanDerWaalsForce
force_t typedefSimTK::VanDerWaalsForce
inverse_area_t typedefSimTK::VanDerWaalsForce
length_t typedefSimTK::VanDerWaalsForce
location_t typedefSimTK::VanDerWaalsForce
realizeAcceleration(const State &state) const SimTK::Force::Custom::Implementation [virtual]
realizeDynamics(const State &state) const SimTK::Force::Custom::Implementation [virtual]
realizeInstance(const State &state) const SimTK::Force::Custom::Implementation [virtual]
realizeModel(State &state) const SimTK::Force::Custom::Implementation [virtual]
realizePosition(const State &state) const SimTK::Force::Custom::Implementation [virtual]
realizeReport(const State &state) const SimTK::Force::Custom::Implementation [virtual]
realizeTime(const State &state) const SimTK::Force::Custom::Implementation [virtual]
realizeTopology(State &state) const SimTK::Force::Custom::Implementation [virtual]
realizeVelocity(const State &state) const SimTK::Force::Custom::Implementation [virtual]
VanDerWaalsForce(const AtomSubsystem &atomSubsystem, length_t cutoff=0.0 *nanometers)SimTK::VanDerWaalsForce [inline]
vdwAtomsSimTK::VanDerWaalsForce [protected]
wallSpheresSimTK::VanDerWaalsForce [protected]
~Implementation()SimTK::Force::Custom::Implementation [virtual]
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