Simbody

SplineFitter.h

Go to the documentation of this file.
00001 #ifndef SimTK_SIMMATH_SPLINE_FITTER_H_
00002 #define SimTK_SIMMATH_SPLINE_FITTER_H_
00003 
00004 /* -------------------------------------------------------------------------- *
00005  *                      SimTK Core: SimTK Simmath(tm)                         *
00006  * -------------------------------------------------------------------------- *
00007  * This is part of the SimTK Core biosimulation toolkit originating from      *
00008  * Simbios, the NIH National Center for Physics-Based Simulation of           *
00009  * Biological Structures at Stanford, funded under the NIH Roadmap for        *
00010  * Medical Research, grant U54 GM072970. See https://simtk.org.               *
00011  *                                                                            *
00012  * Portions copyright (c) 2008 Stanford University and the Authors.           *
00013  * Authors: Peter Eastman                                                     *
00014  * Contributors:                                                              *
00015  *                                                                            *
00016  * Permission is hereby granted, free of charge, to any person obtaining a    *
00017  * copy of this software and associated documentation files (the "Software"), *
00018  * to deal in the Software without restriction, including without limitation  *
00019  * the rights to use, copy, modify, merge, publish, distribute, sublicense,   *
00020  * and/or sell copies of the Software, and to permit persons to whom the      *
00021  * Software is furnished to do so, subject to the following conditions:       *
00022  *                                                                            *
00023  * The above copyright notice and this permission notice shall be included in *
00024  * all copies or substantial portions of the Software.                        *
00025  *                                                                            *
00026  * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
00027  * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,   *
00028  * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL    *
00029  * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,    *
00030  * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR      *
00031  * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE  *
00032  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
00033  * -------------------------------------------------------------------------- */
00034 
00035 #include "SimTKcommon.h"
00036 #include "simmath/internal/common.h"
00037 #include "simmath/internal/Spline.h"
00038 #include "simmath/internal/GCVSPLUtil.h"
00039 
00040 namespace SimTK {
00041 
00074 template <class T>
00075 class SplineFitter {
00076 public:
00077     SplineFitter(const SplineFitter& copy) : impl(copy.impl) {
00078         impl->referenceCount++;
00079     }
00080     SplineFitter operator=(const SplineFitter& copy) {
00081         impl = copy.impl;
00082         impl->referenceCount++;
00083         return *this;
00084     }
00085     ~SplineFitter() {
00086         impl->referenceCount--;
00087         if (impl->referenceCount == 0)
00088             delete impl;
00089     }
00097     static SplineFitter fitFromGCV(int degree, const Vector& x, const Vector_<T>& y) {
00098         Vector_<T> coeff;
00099         Vector wk;
00100         int ier;
00101         GCVSPLUtil::gcvspl(x, y, Vector(x.size(), 1.0), static_cast<T>(1), degree, 2, 0, coeff, wk, ier);
00102         return SplineFitter<T>(new SplineFitterImpl(degree, Spline_<T>(degree, x, coeff), wk[3], wk[4], wk[2]));
00103     }
00112     static SplineFitter fitFromErrorVariance(int degree, const Vector& x, const Vector_<T>& y, Real error) {
00113         Vector_<T> coeff;
00114         Vector wk;
00115         int ier;
00116         GCVSPLUtil::gcvspl(x, y, Vector(x.size(), 1.0), 1, degree, 3, error, coeff, wk, ier);
00117         return SplineFitter<T>(new SplineFitterImpl(degree, Spline_<T>(degree, x, coeff), wk[3], wk[4], wk[2]));
00118     }
00128     static SplineFitter fitFromDOF(int degree, const Vector& x, const Vector_<T>& y, Real dof) {
00129         Vector_<T> coeff;
00130         Vector wk;
00131         int ier;
00132         GCVSPLUtil::gcvspl(x, y, Vector(x.size(), 1.0), static_cast<T>(1), degree, 4, dof, coeff, wk, ier);
00133         return SplineFitter<T>(new SplineFitterImpl(degree, Spline_<T>(degree, x, coeff), wk[3], wk[4], wk[2]));
00134     }
00143     static SplineFitter fitForSmoothingParameter(int degree, const Vector& x, const Vector_<T>& y, Real p) {
00144         Vector_<T> coeff;
00145         Vector wk;
00146         int ier;
00147         GCVSPLUtil::gcvspl(x, y, Vector(x.size(), 1.0), static_cast<T>(1), degree, 1, p, coeff, wk, ier);
00148         return SplineFitter<T>(new SplineFitterImpl(degree, Spline_<T>(degree, x, coeff), wk[3], wk[4], wk[2]));
00149     }
00153     const Spline_<T>& getSpline() {
00154         return impl->spline;
00155     }
00159     Real getSmoothingParameter() {
00160         return impl->p;
00161     }
00165     Real getMeanSquaredError() {
00166         return impl->error;
00167     }
00171     Real getDegreesOfFreedom() {
00172         return impl->dof;
00173     }
00174 private:
00175     class SplineFitterImpl;
00176     SplineFitter(SplineFitterImpl *impl) : impl(impl) {
00177     }
00178     SplineFitterImpl* impl;
00179 };
00180 
00181 template <class T>
00182 class SplineFitter<T>::SplineFitterImpl {
00183 public:
00184     SplineFitterImpl(int degree, const Spline_<T>& spline, Real p, Real error, Real dof) : referenceCount(1), degree(degree), spline(spline), p(p), error(error), dof(dof) {
00185     }
00186     ~SplineFitterImpl() {
00187         assert(referenceCount == 0);
00188     }
00189     int referenceCount;
00190     int degree;
00191     Spline_<T> spline;
00192     Real p, error, dof;
00193 };
00194 
00195 } // namespace SimTK
00196 
00197 #endif // SimTK_SIMMATH_SPLINE_FITTER_H_
00198 
00199 
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines