Here is a list of all class members with links to the classes they belong to:
- GBSAOBCForce()
: GBSAOBCForce
- GBSAOBCForceImpl()
: GBSAOBCForceImpl
- GBVIForce()
: GBVIForce
- GBVIForceImpl()
: GBVIForceImpl
- getAngleParameters()
: HarmonicAngleForce
- getBondParameters()
: HarmonicBondForce
, CustomBondForce
, GBVIForce
- getBondsFromForces()
: GBVIForceImpl
- getComputedValueParameters()
: CustomGBForce
- getConstraintParameters()
: System
- getConstraintTolerance()
: Integrator
- getContextImpl()
: Platform
- getCutoffDistance()
: CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
, CustomGBForce
- getDefaultCollisionFrequency()
: AndersenThermostat
- getDefaultParameters()
: NonbondedForceImpl
, PeriodicTorsionForceImpl
, RBTorsionForceImpl
, AndersenThermostatImpl
, CMMotionRemoverImpl
, CustomBondForceImpl
, CustomExternalForceImpl
, CustomGBForceImpl
, CustomNonbondedForceImpl
, ForceImpl
, GBSAOBCForceImpl
, GBVIForceImpl
, HarmonicAngleForceImpl
, HarmonicBondForceImpl
- getDefaultPluginsDirectory()
: Platform
- getDefaultTemperature()
: AndersenThermostat
- getEnergyFunction()
: CustomBondForce
, CustomExternalForce
, CustomNonbondedForce
- getEnergyTermParameters()
: CustomGBForce
- getErrorTolerance()
: VariableLangevinIntegrator
, VariableVerletIntegrator
- getEwaldErrorTolerance()
: NonbondedForce
- getExceptionParameters()
: NonbondedForce
- getExclusionParticles()
: CustomGBForce
, CustomNonbondedForce
- getForce()
: System
- getForces()
: ContextImpl
, State
- getFrequency()
: CMMotionRemover
- getFriction()
: BrownianIntegrator
, LangevinIntegrator
, VariableLangevinIntegrator
- getFunctionParameters()
: CustomGBForce
, CustomNonbondedForce
- getGlobalParameterDefaultValue()
: CustomBondForce
, CustomExternalForce
, CustomGBForce
, CustomNonbondedForce
- getGlobalParameterName()
: CustomNonbondedForce
, CustomBondForce
, CustomExternalForce
, CustomGBForce
- getImpl()
: Kernel
- getIntegrator()
: Context
, ContextImpl
- getKernelNames()
: BrownianIntegrator
, Integrator
, AndersenThermostatImpl
, CMMotionRemoverImpl
, CustomBondForceImpl
, CustomExternalForceImpl
, CustomGBForceImpl
, CustomNonbondedForceImpl
, ForceImpl
, GBSAOBCForceImpl
, GBVIForceImpl
, HarmonicAngleForceImpl
, HarmonicBondForceImpl
, NonbondedForceImpl
, PeriodicTorsionForceImpl
, RBTorsionForceImpl
, LangevinIntegrator
, VariableLangevinIntegrator
, VariableVerletIntegrator
, VerletIntegrator
- getKineticEnergy()
: State
- getName()
: Kernel
, KernelImpl
, Platform
- getNonbondedMethod()
: CustomGBForce
, CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
- getNumAngles()
: HarmonicAngleForce
- getNumBonds()
: CustomBondForce
, GBVIForce
, HarmonicBondForce
- getNumComputedValues()
: CustomGBForce
- getNumConstraints()
: System
- getNumEnergyTerms()
: CustomGBForce
- getNumExceptions()
: NonbondedForce
- getNumExclusions()
: CustomGBForce
, CustomNonbondedForce
- getNumForces()
: System
- getNumFunctions()
: CustomNonbondedForce
, CustomGBForce
- getNumGlobalParameters()
: CustomBondForce
, CustomExternalForce
, CustomGBForce
, CustomNonbondedForce
- getNumParticles()
: GBSAOBCForce
, CustomExternalForce
, CustomGBForce
, CustomNonbondedForce
, GBVIForce
, NonbondedForce
, System
- getNumPerBondParameters()
: CustomBondForce
- getNumPerParticleParameters()
: CustomExternalForce
, CustomGBForce
, CustomNonbondedForce
- getNumPlatforms()
: Platform
- getNumTorsions()
: PeriodicTorsionForce
, RBTorsionForce
- getOwner()
: GBSAOBCForceImpl
, AndersenThermostatImpl
, ContextImpl
, CustomBondForceImpl
, CustomExternalForceImpl
, CMMotionRemoverImpl
, CustomNonbondedForceImpl
, HarmonicAngleForceImpl
, HarmonicBondForceImpl
, RBTorsionForceImpl
, GBVIForceImpl
, PeriodicTorsionForceImpl
, CustomGBForceImpl
, NonbondedForceImpl
, ForceImpl
- getParameter()
: Context
, ContextImpl
- getParameters()
: State
- getParticleMass()
: System
- getParticleParameters()
: GBSAOBCForce
, GBVIForce
, CustomGBForce
, CustomNonbondedForce
, CustomExternalForce
, NonbondedForce
- getPerBondParameterName()
: CustomBondForce
- getPeriodicBoxVectors()
: System
- getPerParticleParameterName()
: CustomGBForce
, CustomNonbondedForce
, CustomExternalForce
- getPlatform()
: Context
, Platform
, KernelImpl
, ContextImpl
- getPlatformByName()
: Platform
- getPlatformData()
: ContextImpl
- getPositions()
: ContextImpl
, State
- getPotentialEnergy()
: State
- getPropertyDefaultValue()
: Platform
- getPropertyNames()
: Platform
- getPropertyValue()
: Platform
- getRandomNumberSeed()
: VariableLangevinIntegrator
, AndersenThermostat
, BrownianIntegrator
, LangevinIntegrator
- getReactionFieldDielectric()
: NonbondedForce
- getSoluteDielectric()
: GBSAOBCForce
, GBVIForce
- getSolventDielectric()
: GBVIForce
, GBSAOBCForce
- getSpeed()
: Platform
- getState()
: Context
- getStepSize()
: Integrator
- getSystem()
: ContextImpl
, Context
- getTemperature()
: VariableLangevinIntegrator
, BrownianIntegrator
, LangevinIntegrator
- getTime()
: State
, ContextImpl
- getTorsionParameters()
: PeriodicTorsionForce
, RBTorsionForce
- getVelocities()
: ContextImpl
, State