AndersenThermostat | This class uses the Andersen method to maintain constant temperature |

AndersenThermostatImpl | This is the internal implementation of AndersenThermostat |

BrownianIntegrator | This is an Integrator which simulates a System using Brownian dynamics |

CMAPTorsionForce | This class implements an interaction between pairs of dihedral angles |

CMAPTorsionForceImpl | This is the internal implementation of CMAPTorsionForce |

CMMotionRemover | This class prevents the center of mass of a System from drifting |

CMMotionRemoverImpl | This is the internal implementation of CMMotionRemover |

Context | A Context stores the complete state of a simulation |

ContextImpl | This is the internal implementation of a Context |

CustomAngleForce | This class implements interactions between sets of three particles that depend on the angle between them |

CustomAngleForceImpl | This is the internal implementation of CustomAngleForce |

CustomBondForce | This class implements bonded interactions between pairs of particles |

CustomBondForceImpl | This is the internal implementation of CustomBondForce |

CustomExternalForce | This class implements an "external" force on particles |

CustomExternalForceImpl | This is the internal implementation of CustomExternalForce |

CustomGBForce | This class implements complex, multiple stage nonbonded interactions between particles |

CustomGBForceImpl | This is the internal implementation of CustomGBForce |

CustomHbondForce | This class supports a wide variety of energy functions used to represent hydrogen bonding |

CustomHbondForceImpl | This is the internal implementation of CustomNonbondedForce |

CustomNonbondedForce | This class implements nonbonded interactions between particles |

CustomNonbondedForceImpl | This is the internal implementation of CustomNonbondedForce |

CustomTorsionForce | This class implements interactions between sets of four particles that depend on the torsion angle between them |

CustomTorsionForceImpl | This is the internal implementation of CustomTorsionForce |

Force | Force objects apply forces to the particles in a System, or alter their behavior in other ways |

ForceImpl | A ForceImpl provides the internal implementation of a Force |

GBSAOBCForce | This class implements an implicit solvation force using the GBSA-OBC model |

GBSAOBCForceImpl | This is the internal implementation of GBSAOBCForce |

GBVIForce | This class implements an implicit solvation force using the GB/VI model |

GBVIForceImpl | This is the internal implementation of GBVIForce |

HarmonicAngleForce | This class implements an interaction between groups of three particles that varies harmonically with the angle between them |

HarmonicAngleForceImpl | This is the internal implementation of HarmonicAngleForce |

HarmonicBondForce | This class implements an interaction between pairs of particles that varies harmonically with the distance between them |

HarmonicBondForceImpl | This is the internal implementation of HarmonicBondForce |

Integrator | An Integrator defines a method for simulating a System by integrating the equations of motion |

Kernel | A Kernel encapsulates a particular implementation of a calculation that can be performed on the data in a Context |

KernelFactory | A KernelFactory is an object that can create KernelImpls |

KernelImpl | A KernelImpl defines the internal implementation of a Kernel object |

LangevinIntegrator | This is an Integrator which simulates a System using Langevin dynamics |

LocalEnergyMinimizer | Given a Context, this class searches for a new set of particle positions that represent a local minimum of the potential energy |

MonteCarloBarostat | This class uses a Monte Carlo algorithm to adjust the size of the periodic box, simulating the effect of constant pressure |

MonteCarloBarostatImpl | This is the internal implementation of MonteCarloBarostat |

NonbondedForce | This class implements nonbonded interactions between particles, including a Coulomb force to represent electrostatics and a Lennard-Jones force to represent van der Waals interactions |

NonbondedForceImpl | This is the internal implementation of NonbondedForce |

OpenMMException | This class is used for all exceptions thrown by OpenMM |

PeriodicTorsionForce | This class implements an interaction between groups of four particles that varies periodically with the torsion angle between them |

PeriodicTorsionForceImpl | This is the internal implementation of PeriodicTorsionForce |

Platform | A Platform defines an implementation of all the kernels needed to perform some calculation |

RBTorsionForce | This class implements an interaction between groups of four particles that varies with the torsion angle between them according to the Ryckaert-Bellemans potential |

RBTorsionForceImpl | This is the internal implementation of RBTorsionForce |

SplineFitter | SplineFitter provides routines for performing cubic spline interpolation |

State | A State object records a snapshot of the current state of a simulation at a point in time |

System | This class represents a molecular system |

VariableLangevinIntegrator | This is an error contolled, variable time step Integrator that simulates a System using Langevin dynamics |

VariableVerletIntegrator | This is an error contolled, variable time step Integrator that simulates a System using the leap-frog Verlet algorithm |

Vec3 | This class represents a three component vector |

VerletIntegrator | This is an Integrator which simulates a System using the leap-frog Verlet algorithm |

XmlSerializer | XmlSerializer is used for serializing objects as XML, and for reconstructing them again |

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