Here is a list of all class members with links to the classes they belong to:
- serialize()
: XmlSerializer
- setAcceptorParameters()
: CustomHbondForce
- setAngleParameters()
: HarmonicAngleForce
, CustomAngleForce
- setBondParameters()
: CustomBondForce
, GBVIForce
, HarmonicBondForce
- setBornRadiusScalingMethod()
: GBVIForce
- setComputedValueParameters()
: CustomGBForce
- setConstraintParameters()
: System
- setConstraintTolerance()
: Integrator
- setCutoffDistance()
: GBVIForce
, NonbondedForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, GBSAOBCForce
- setDefaultPeriodicBoxVectors()
: System
- setDonorParameters()
: CustomHbondForce
- setEnergyFunction()
: CustomAngleForce
, CustomBondForce
, CustomExternalForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
- setEnergyTermParameters()
: CustomGBForce
- setErrorTolerance()
: VariableLangevinIntegrator
, VariableVerletIntegrator
- setEwaldErrorTolerance()
: NonbondedForce
- setExceptionParameters()
: NonbondedForce
- setExclusionParticles()
: CustomHbondForce
, CustomNonbondedForce
, CustomGBForce
- setForceGroup()
: Force
- setFrequency()
: CMMotionRemover
, MonteCarloBarostat
- setFriction()
: BrownianIntegrator
, LangevinIntegrator
, VariableLangevinIntegrator
- setFunctionParameters()
: CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- setGlobalParameterDefaultValue()
: CustomAngleForce
, CustomBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
- setGlobalParameterName()
: CustomAngleForce
, CustomBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
- setGlobalVariable()
: CustomIntegrator
- setGlobalVariableByName()
: CustomIntegrator
- setMapParameters()
: CMAPTorsionForce
- setNonbondedMethod()
: GBVIForce
, NonbondedForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, GBSAOBCForce
- setParameter()
: Context
, ContextImpl
- setParticleMass()
: System
- setParticleParameters()
: CustomExternalForce
, CustomGBForce
, CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
- setParticles()
: VirtualSite
- setPerAcceptorParameterName()
: CustomHbondForce
- setPerAngleParameterName()
: CustomAngleForce
- setPerBondParameterName()
: CustomBondForce
- setPerDofVariable()
: CustomIntegrator
- setPerDofVariableByName()
: CustomIntegrator
- setPerDonorParameterName()
: CustomHbondForce
- setPeriodicBoxVectors()
: Context
, ContextImpl
- setPerParticleParameterName()
: CustomExternalForce
, CustomGBForce
, CustomNonbondedForce
- setPerTorsionParameterName()
: CustomTorsionForce
- setPlatformData()
: ContextImpl
- setPositions()
: Context
, ContextImpl
- setPropertyDefaultValue()
: Platform
- setPropertyValue()
: Platform
- setQuinticLowerLimitFactor()
: GBVIForce
- setQuinticUpperBornRadiusLimit()
: GBVIForce
- setRandomNumberSeed()
: BrownianIntegrator
, CustomIntegrator
, LangevinIntegrator
, VariableLangevinIntegrator
, MonteCarloBarostat
, AndersenThermostat
- setReactionFieldDielectric()
: NonbondedForce
- setReciprocalSpaceForceGroup()
: NonbondedForce
- setSoluteDielectric()
: GBVIForce
, GBSAOBCForce
- setSolventDielectric()
: GBSAOBCForce
, GBVIForce
- setStepSize()
: Integrator
- setTemperature()
: VariableLangevinIntegrator
, BrownianIntegrator
, LangevinIntegrator
, MonteCarloBarostat
- setTime()
: ContextImpl
, Context
- setTorsionParameters()
: CustomTorsionForce
, CMAPTorsionForce
, RBTorsionForce
, PeriodicTorsionForce
- setUseDispersionCorrection()
: NonbondedForce
- setVelocities()
: Context
, ContextImpl
- setVirtualSite()
: System
- SingleParticle
: CustomGBForce
- State()
: State
- stateChanged()
: CustomIntegrator
, Integrator
- step()
: VariableVerletIntegrator
, VariableLangevinIntegrator
, VerletIntegrator
, CustomIntegrator
, Integrator
, BrownianIntegrator
, LangevinIntegrator
- stepTo()
: VariableLangevinIntegrator
, VariableVerletIntegrator
- supportsDoublePrecision()
: Platform
- supportsKernels()
: Platform
- System()
: System