Here is a list of all class members with links to the classes they belong to:
- g -
- GBSAOBCForce()
: GBSAOBCForce
- GBSAOBCForceImpl()
: GBSAOBCForceImpl
- GBVIForce()
: GBVIForce
- GBVIForceImpl()
: GBVIForceImpl
- getAcceptorParameters()
: CustomHbondForce
- getAngleParameters()
: CustomAngleForce
, HarmonicAngleForce
- getAs()
: Kernel
- getBondedParticles()
: CustomBondForceImpl
, ForceImpl
, HarmonicBondForceImpl
- getBondParameters()
: HarmonicBondForce
, CustomBondForce
, CustomCompoundBondForce
, GBVIForce
- getBondsFromForces()
: GBVIForceImpl
- getBornRadiusScalingMethod()
: GBVIForce
- getComputationStep()
: CustomIntegrator
- getComputedValueParameters()
: CustomGBForce
- getConstraintParameters()
: System
- getConstraintTolerance()
: Integrator
- getContextImpl()
: Force
, Platform
- getCutoffDistance()
: CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
- getDefaultCollisionFrequency()
: AndersenThermostat
- getDefaultParameters()
: AndersenThermostatImpl
, CMAPTorsionForceImpl
, CMMotionRemoverImpl
, CustomAngleForceImpl
, CustomBondForceImpl
, CustomCompoundBondForceImpl
, CustomExternalForceImpl
, CustomGBForceImpl
, CustomHbondForceImpl
, CustomNonbondedForceImpl
, CustomTorsionForceImpl
, ForceImpl
, GBSAOBCForceImpl
, GBVIForceImpl
, HarmonicAngleForceImpl
, HarmonicBondForceImpl
, MonteCarloBarostatImpl
, NonbondedForceImpl
, PeriodicTorsionForceImpl
, RBTorsionForceImpl
- getDefaultPeriodicBoxVectors()
: System
- getDefaultPluginsDirectory()
: Platform
- getDefaultPressure()
: MonteCarloBarostat
- getDefaultTemperature()
: AndersenThermostat
- getDonorParameters()
: CustomHbondForce
- getEnergyFunction()
: CustomTorsionForce
, CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomHbondForce
, CustomNonbondedForce
- getEnergyTermParameters()
: CustomGBForce
- getErrorTolerance()
: VariableLangevinIntegrator
, VariableVerletIntegrator
- getEwaldErrorTolerance()
: NonbondedForce
- getExceptionParameters()
: NonbondedForce
- getExclusionParticles()
: CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- getForce()
: System
- getForceGroup()
: Force
- getForceImpls()
: ContextImpl
- getForces()
: ContextImpl
, State
- getFrequency()
: CMMotionRemover
, MonteCarloBarostat
- getFriction()
: BrownianIntegrator
, LangevinIntegrator
, VariableLangevinIntegrator
- getFunctionParameters()
: CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- getGlobalParameterDefaultValue()
: CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
- getGlobalParameterName()
: CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
- getGlobalVariable()
: CustomIntegrator
- getGlobalVariableName()
: CustomIntegrator
- getImpl()
: Kernel
- getImplInContext()
: Force
- getIntegrator()
: Context
, ContextImpl
- getKernelNames()
: GBSAOBCForceImpl
, GBVIForceImpl
, HarmonicAngleForceImpl
, HarmonicBondForceImpl
, MonteCarloBarostatImpl
, NonbondedForceImpl
, PeriodicTorsionForceImpl
, RBTorsionForceImpl
, LangevinIntegrator
, VariableLangevinIntegrator
, VariableVerletIntegrator
, VerletIntegrator
, BrownianIntegrator
, CustomIntegrator
, Integrator
, AndersenThermostatImpl
, CMAPTorsionForceImpl
, CMMotionRemoverImpl
, CustomAngleForceImpl
, CustomBondForceImpl
, CustomCompoundBondForceImpl
, CustomExternalForceImpl
, CustomGBForceImpl
, CustomHbondForceImpl
, CustomNonbondedForceImpl
, CustomTorsionForceImpl
, ForceImpl
- getKineticEnergy()
: State
- getKineticEnergyExpression()
: CustomIntegrator
- getLastForceGroups()
: ContextImpl
- getMapParameters()
: CMAPTorsionForce
- getMolecules()
: ContextImpl
- getName()
: Kernel
, KernelImpl
, Platform
- getNonbondedMethod()
: CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
- getNumAcceptors()
: CustomHbondForce
- getNumAngles()
: CustomAngleForce
, HarmonicAngleForce
- getNumBonds()
: GBVIForce
, CustomBondForce
, CustomCompoundBondForce
, HarmonicBondForce
- getNumComputations()
: CustomIntegrator
- getNumComputedValues()
: CustomGBForce
- getNumConstraints()
: System
- getNumDonors()
: CustomHbondForce
- getNumEnergyTerms()
: CustomGBForce
- getNumExceptions()
: NonbondedForce
- getNumExclusions()
: CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- getNumForces()
: System
- getNumFunctions()
: CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- getNumGlobalParameters()
: CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
, CustomAngleForce
- getNumGlobalVariables()
: CustomIntegrator
- getNumMaps()
: CMAPTorsionForce
- getNumParticles()
: System
, CustomNonbondedForce
, CustomExternalForce
, CustomGBForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
, VirtualSite
- getNumParticlesPerBond()
: CustomCompoundBondForce
- getNumPerAcceptorParameters()
: CustomHbondForce
- getNumPerAngleParameters()
: CustomAngleForce
- getNumPerBondParameters()
: CustomBondForce
, CustomCompoundBondForce
- getNumPerDofVariables()
: CustomIntegrator
- getNumPerDonorParameters()
: CustomHbondForce
- getNumPerParticleParameters()
: CustomExternalForce
, CustomGBForce
, CustomNonbondedForce
- getNumPerTorsionParameters()
: CustomTorsionForce
- getNumPlatforms()
: Platform
- getNumTorsions()
: CMAPTorsionForce
, CustomTorsionForce
, PeriodicTorsionForce
, RBTorsionForce
- getOpenMMVersion()
: Platform
- getOwner()
: CustomTorsionForceImpl
, CustomExternalForceImpl
, MonteCarloBarostatImpl
, GBSAOBCForceImpl
, CustomHbondForceImpl
, CustomBondForceImpl
, CustomAngleForceImpl
, CMAPTorsionForceImpl
, RBTorsionForceImpl
, CustomGBForceImpl
, AndersenThermostatImpl
, CMMotionRemoverImpl
, ContextImpl
, CustomCompoundBondForceImpl
, CustomNonbondedForceImpl
, GBVIForceImpl
, HarmonicAngleForceImpl
, HarmonicBondForceImpl
, NonbondedForceImpl
, ForceImpl
, PeriodicTorsionForceImpl
- getParameter()
: Context
, ContextImpl
- getParameters()
: ContextImpl
, State
- getParticle()
: VirtualSite
- getParticleMass()
: System
- getParticleParameters()
: CustomNonbondedForce
, CustomGBForce
, CustomExternalForce
, NonbondedForce
, GBSAOBCForce
, GBVIForce
- getPerAcceptorParameterName()
: CustomHbondForce
- getPerAngleParameterName()
: CustomAngleForce
- getPerBondParameterName()
: CustomCompoundBondForce
, CustomBondForce
- getPerDofVariable()
: CustomIntegrator
- getPerDofVariableName()
: CustomIntegrator
- getPerDonorParameterName()
: CustomHbondForce
- getPeriodicBoxVectors()
: ContextImpl
, State
- getPeriodicBoxVolume()
: State
- getPerParticleParameterName()
: CustomExternalForce
, CustomNonbondedForce
, CustomGBForce
- getPerTorsionParameterName()
: CustomTorsionForce
- getPlatform()
: KernelImpl
, Context
, ContextImpl
, Context
, Platform
- getPlatformByName()
: Platform
- getPlatformData()
: ContextImpl
- getPositions()
: State
, ContextImpl
- getPotentialEnergy()
: State
- getPropertyDefaultValue()
: Platform
- getPropertyNames()
: Platform
- getPropertyValue()
: Platform
- getQuinticLowerLimitFactor()
: GBVIForce
- getQuinticUpperBornRadiusLimit()
: GBVIForce
- getRandomNumberSeed()
: CustomIntegrator
, BrownianIntegrator
, MonteCarloBarostat
, AndersenThermostat
, VariableLangevinIntegrator
, LangevinIntegrator
- getReactionFieldDielectric()
: NonbondedForce
- getReciprocalSpaceForceGroup()
: NonbondedForce
- getSoluteDielectric()
: GBVIForce
, GBSAOBCForce
- getSolventDielectric()
: GBSAOBCForce
, GBVIForce
- getSpeed()
: Platform
- getState()
: State
, Context
- getStepSize()
: Integrator
- getSystem()
: Context
, ContextImpl
- getTemperature()
: BrownianIntegrator
, VariableLangevinIntegrator
, LangevinIntegrator
, MonteCarloBarostat
- getTime()
: State
, ContextImpl
- getTorsionParameters()
: CMAPTorsionForce
, PeriodicTorsionForce
, RBTorsionForce
, CustomTorsionForce
- getUseDispersionCorrection()
: NonbondedForce
- getVelocities()
: ContextImpl
, State
- getVirtualSite()
: System
- getWeight()
: TwoParticleAverageSite
, ThreeParticleAverageSite
- getWeight12()
: OutOfPlaneSite
- getWeight13()
: OutOfPlaneSite
- getWeightCross()
: OutOfPlaneSite