addExclusion(int particle1, int particle2) | CustomNonbondedForce | |
addFunction(const std::string &name, const std::vector< double > &values, double min, double max) | CustomNonbondedForce | |
addGlobalParameter(const std::string &name, double defaultValue) | CustomNonbondedForce | |
addInteractionGroup(const std::set< int > &set1, const std::set< int > &set2) | CustomNonbondedForce | |
addParticle(const std::vector< double > ¶meters) | CustomNonbondedForce | |
addPerParticleParameter(const std::string &name) | CustomNonbondedForce | |
addTabulatedFunction(const std::string &name, TabulatedFunction *function) | CustomNonbondedForce | |
createExclusionsFromBonds(const std::vector< std::pair< int, int > > &bonds, int bondCutoff) | CustomNonbondedForce | |
createImpl() const | CustomNonbondedForce | protectedvirtual |
CustomNonbondedForce(const std::string &energy) | CustomNonbondedForce | explicit |
CustomNonbondedForce(const CustomNonbondedForce &rhs) | CustomNonbondedForce | |
CutoffNonPeriodic enum value | CustomNonbondedForce | |
CutoffPeriodic enum value | CustomNonbondedForce | |
Force() | Force | inline |
getContextImpl(Context &context) | Force | protected |
getCutoffDistance() const | CustomNonbondedForce | |
getEnergyFunction() const | CustomNonbondedForce | |
getExclusionParticles(int index, int &particle1, int &particle2) const | CustomNonbondedForce | |
getForceGroup() const | Force | |
getFunctionParameters(int index, std::string &name, std::vector< double > &values, double &min, double &max) const | CustomNonbondedForce | |
getGlobalParameterDefaultValue(int index) const | CustomNonbondedForce | |
getGlobalParameterName(int index) const | CustomNonbondedForce | |
getImplInContext(Context &context) | Force | protected |
getInteractionGroupParameters(int index, std::set< int > &set1, std::set< int > &set2) const | CustomNonbondedForce | |
getNonbondedMethod() const | CustomNonbondedForce | |
getNumExclusions() const | CustomNonbondedForce | inline |
getNumFunctions() const | CustomNonbondedForce | inline |
getNumGlobalParameters() const | CustomNonbondedForce | inline |
getNumInteractionGroups() const | CustomNonbondedForce | inline |
getNumParticles() const | CustomNonbondedForce | inline |
getNumPerParticleParameters() const | CustomNonbondedForce | inline |
getNumTabulatedFunctions() const | CustomNonbondedForce | inline |
getParticleParameters(int index, std::vector< double > ¶meters) const | CustomNonbondedForce | |
getPerParticleParameterName(int index) const | CustomNonbondedForce | |
getSwitchingDistance() const | CustomNonbondedForce | |
getTabulatedFunction(int index) const | CustomNonbondedForce | |
getTabulatedFunction(int index) | CustomNonbondedForce | |
getTabulatedFunctionName(int index) const | CustomNonbondedForce | |
getUseLongRangeCorrection() const | CustomNonbondedForce | |
getUseSwitchingFunction() const | CustomNonbondedForce | |
NoCutoff enum value | CustomNonbondedForce | |
NonbondedMethod enum name | CustomNonbondedForce | |
setCutoffDistance(double distance) | CustomNonbondedForce | |
setEnergyFunction(const std::string &energy) | CustomNonbondedForce | |
setExclusionParticles(int index, int particle1, int particle2) | CustomNonbondedForce | |
setForceGroup(int group) | Force | |
setFunctionParameters(int index, const std::string &name, const std::vector< double > &values, double min, double max) | CustomNonbondedForce | |
setGlobalParameterDefaultValue(int index, double defaultValue) | CustomNonbondedForce | |
setGlobalParameterName(int index, const std::string &name) | CustomNonbondedForce | |
setInteractionGroupParameters(int index, const std::set< int > &set1, const std::set< int > &set2) | CustomNonbondedForce | |
setNonbondedMethod(NonbondedMethod method) | CustomNonbondedForce | |
setParticleParameters(int index, const std::vector< double > ¶meters) | CustomNonbondedForce | |
setPerParticleParameterName(int index, const std::string &name) | CustomNonbondedForce | |
setSwitchingDistance(double distance) | CustomNonbondedForce | |
setUseLongRangeCorrection(bool use) | CustomNonbondedForce | |
setUseSwitchingFunction(bool use) | CustomNonbondedForce | |
updateParametersInContext(Context &context) | CustomNonbondedForce | |
~CustomNonbondedForce() | CustomNonbondedForce | |
~Force() | Force | inlinevirtual |