This class implements a configurable equilibrium muscle model, as described in Millard et al. (2013). More...

#include <Millard2012EquilibriumMuscle.h>

Inheritance diagram for OpenSim::Millard2012EquilibriumMuscle:

Public Member Functions
	Millard2012EquilibriumMuscle ()
	Default constructor. More...

	Millard2012EquilibriumMuscle (const std::string &aName, double aMaxIsometricForce, double aOptimalFiberLength, double aTendonSlackLength, double aPennationAngle)
	Constructs a functional muscle using default curves and activation model parameters. More...

bool	getUseFiberDamping () const

double	getFiberDamping () const

double	getDefaultActivation () const

double	getDefaultFiberLength () const

double	getActivationTimeConstant () const

double	getDeactivationTimeConstant () const

double	getMinimumActivation () const

const ActiveForceLengthCurve &	getActiveForceLengthCurve () const

const ForceVelocityCurve &	getForceVelocityCurve () const

const FiberForceLengthCurve &	getFiberForceLengthCurve () const

const TendonForceLengthCurve &	getTendonForceLengthCurve () const

const MuscleFixedWidthPennationModel &	getPennationModel () const

double	getMaximumPennationAngle () const

double	getMinimumFiberLength () const

double	getMinimumFiberLengthAlongTendon () const

double	getTendonForceMultiplier (SimTK::State &s) const

double	getFiberStiffnessAlongTendon (const SimTK::State &s) const

double	getFiberVelocity (const SimTK::State &s) const

double	getActivationDerivative (const SimTK::State &s) const

Array< std::string >	getStateVariableNames () const final

SimTK::SystemYIndex	getStateVariableSystemIndex (const std::string &stateVariableName) const final

void	setMuscleConfiguration (bool ignoreTendonCompliance, bool ignoreActivationDynamics, double dampingCoefficient)

void	setFiberDamping (double dampingCoefficient)

void	setDefaultActivation (double activation)

void	setActivation (SimTK::State &s, double activation) const

void	setDefaultFiberLength (double fiberLength)

void	setActivationTimeConstant (double activationTimeConstant)

void	setDeactivationTimeConstant (double deactivationTimeConstant)

void	setMinimumActivation (double minimumActivation)

void	setActiveForceLengthCurve (ActiveForceLengthCurve &aActiveForceLengthCurve)

void	setForceVelocityCurve (ForceVelocityCurve &aForceVelocityCurve)

void	setFiberForceLengthCurve (FiberForceLengthCurve &aFiberForceLengthCurve)

void	setTendonForceLengthCurve (TendonForceLengthCurve &aTendonForceLengthCurve)

void	setFiberLength (SimTK::State &s, double fiberLength) const

double	computeActuation (const SimTK::State &s) const final

void	computeInitialFiberEquilibrium (SimTK::State &s) const override
	Computes the fiber length such that the fiber and tendon are developing the same force, distributing the velocity of the entire musculotendon actuator between the fiber and tendon according to their relative stiffnesses. More...

void	computeFiberEquilibriumAtZeroVelocity (SimTK::State &s) const override
	Computes the fiber length such that the fiber and tendon are developing the same force, assuming velocities are zero. More...

Property declarations
These are the serializable properties associated with this class.
	OpenSim_DECLARE_PROPERTY (fiber_damping, double,"The linear damping of the fiber.")

	OpenSim_DECLARE_PROPERTY (default_activation, double,"Assumed initial activation level if none is assigned.")

	OpenSim_DECLARE_PROPERTY (default_fiber_length, double,"Assumed initial fiber length if none is assigned.")

	OpenSim_DECLARE_PROPERTY (activation_time_constant, double,"Activation time constant (in seconds).")

	OpenSim_DECLARE_PROPERTY (deactivation_time_constant, double,"Deactivation time constant (in seconds).")

	OpenSim_DECLARE_PROPERTY (minimum_activation, double,"Activation lower bound.")

	OpenSim_DECLARE_UNNAMED_PROPERTY (ActiveForceLengthCurve,"Active-force-length curve.")

	OpenSim_DECLARE_UNNAMED_PROPERTY (ForceVelocityCurve,"Force-velocity curve.")

	OpenSim_DECLARE_UNNAMED_PROPERTY (FiberForceLengthCurve,"Passive-force-length curve.")

	OpenSim_DECLARE_UNNAMED_PROPERTY (TendonForceLengthCurve,"Tendon-force-length curve.")

Public Member Functions inherited from OpenSim::Muscle
	OpenSim_DECLARE_PROPERTY (max_isometric_force, double,"Maximum isometric force that the fibers can generate")

	OpenSim_DECLARE_PROPERTY (optimal_fiber_length, double,"Optimal length of the muscle fibers")

	OpenSim_DECLARE_PROPERTY (tendon_slack_length, double,"Resting length of the tendon")

	OpenSim_DECLARE_PROPERTY (pennation_angle_at_optimal, double,"Angle between tendon and fibers at optimal fiber length expressed in radians")

	OpenSim_DECLARE_PROPERTY (max_contraction_velocity, double,"Maximum contraction velocity of the fibers, in optimal fiberlengths/second")

	OpenSim_DECLARE_PROPERTY (ignore_tendon_compliance, bool,"Compute muscle dynamics ignoring tendon compliance. Tendon is assumed to be rigid.")

	OpenSim_DECLARE_PROPERTY (ignore_activation_dynamics, bool,"Compute muscle dynamics ignoring activation dynamics. Activation is equivalent to excitation.")

	Muscle ()
	Default constructor. More...

double	getMaxIsometricForce () const
	get/set the maximum isometric force (in N) that the fibers can generate More...

void	setMaxIsometricForce (double maxIsometricForce)

double	getOptimalFiberLength () const
	get/set the optimal length (in m) of the muscle fibers (lumped as a single fiber) More...

void	setOptimalFiberLength (double optimalFiberLength)

double	getTendonSlackLength () const
	get/set the resting (slack) length (in m) of the tendon that is in series with the muscle fiber More...

void	setTendonSlackLength (double tendonSlackLength)

double	getPennationAngleAtOptimalFiberLength () const
	get/set the angle (in radians) between fibers at their optimal fiber length and the tendon More...

void	setPennationAngleAtOptimalFiberLength (double pennationAngle)

double	getMaxContractionVelocity () const
	get/set the maximum contraction velocity of the fibers, in optimal fiber-lengths per second More...

void	setMaxContractionVelocity (double maxContractionVelocity)

bool	getIgnoreTendonCompliance (const SimTK::State &s) const
	Get/set Modeling (runtime) option to ignore tendon compliance when computing muscle dynamics. More...

void	setIgnoreTendonCompliance (SimTK::State &s, bool ignore) const

bool	getIgnoreActivationDynamics (const SimTK::State &s) const
	Get/set Modeling (runtime) option to ignore activation dynamics when computing muscle dynamics. More...

void	setIgnoreActivationDynamics (SimTK::State &s, bool ignore) const

virtual double	getActivation (const SimTK::State &s) const
	get the activation level of the muscle, which modulates the active force of the muscle and has a normalized (0 to 1) value Note: method remains virtual to permit override by deprecated muscles. More...

double	getFiberLength (const SimTK::State &s) const
	get the current working fiber length (m) for the muscle More...

double	getPennationAngle (const SimTK::State &s) const
	get the current pennation angle (radians) between the fiber and tendon at the current fiber length More...

double	getCosPennationAngle (const SimTK::State &s) const
	get the cosine of the current pennation angle (radians) between the fiber and tendon at the current fiber length More...

double	getTendonLength (const SimTK::State &s) const
	get the current tendon length (m) given the current joint angles and fiber length More...

double	getNormalizedFiberLength (const SimTK::State &s) const
	get the current normalized fiber length (fiber_length/optimal_fiber_length) More...

double	getFiberLengthAlongTendon (const SimTK::State &s) const
	get the current fiber length (m) projected (*cos(pennationAngle)) onto the tendon direction More...

double	getTendonStrain (const SimTK::State &s) const
	get the current tendon strain (delta_l/tendon_slack_length is dimensionless) More...

double	getFiberPotentialEnergy (const SimTK::State &s) const
	the potential energy (J) stored in the fiber due to its parallel elastic element More...

double	getTendonPotentialEnergy (const SimTK::State &s) const
	the potential energy (J) stored in the tendon More...

double	getMusclePotentialEnergy (const SimTK::State &s) const
	the total potential energy (J) stored in the muscle More...

double	getPassiveForceMultiplier (const SimTK::State &s) const
	get the passive fiber (parallel elastic element) force multiplier More...

double	getActiveForceLengthMultiplier (const SimTK::State &s) const
	get the active fiber (contractile element) force multiplier due to current fiber length More...

double	getFiberVelocity (const SimTK::State &s) const
	get current fiber velocity (m/s) positive is lengthening More...

double	getNormalizedFiberVelocity (const SimTK::State &s) const
	get normalize fiber velocity (fiber_lengths/s / max_contraction_velocity) More...

double	getFiberVelocityAlongTendon (const SimTK::State &s) const
	get the current afiber velocity (m/s) projected onto the tendon direction More...

double	getPennationAngularVelocity (const SimTK::State &s) const
	get pennation angular velocity (radians/s) More...

double	getTendonVelocity (const SimTK::State &s) const
	get the tendon velocity (m/s) positive is lengthening More...

double	getForceVelocityMultiplier (const SimTK::State &s) const
	get the dimensionless multiplier resulting from the fiber's force-velocity curve More...

double	getFiberForce (const SimTK::State &s) const
	get the current fiber force (N) applied to the tendon More...

double	getFiberForceAlongTendon (const SimTK::State &s) const
	get the force of the fiber (N/m) along the direction of the tendon More...

double	getActiveFiberForce (const SimTK::State &s) const
	get the current active fiber force (N) due to activationforce_lengthforce_velocity relationships More...

double	getPassiveFiberForce (const SimTK::State &s) const
	get the current passive fiber force (N) passive_force_length relationship More...

double	getActiveFiberForceAlongTendon (const SimTK::State &s) const
	get the current active fiber force (N) projected onto the tendon direction More...

double	getPassiveFiberForceAlongTendon (const SimTK::State &s) const
	get the current passive fiber force (N) projected onto the tendon direction More...

double	getTendonForce (const SimTK::State &s) const
	get the current tendon force (N) applied to bones More...

double	getFiberStiffness (const SimTK::State &s) const
	get the current fiber stiffness (N/m) defined as the partial derivative of fiber force w.r.t. More...

double	getFiberStiffnessAlongTendon (const SimTK::State &s) const
	get the stiffness of the fiber (N/m) along the direction of the tendon, that is the partial derivative of the fiber force along the tendon with respect to small changes in fiber length along the tendon More...

double	getTendonStiffness (const SimTK::State &s) const
	get the current tendon stiffness (N/m) defined as the partial derivative of tendon force w.r.t. More...

double	getMuscleStiffness (const SimTK::State &s) const
	get the current muscle stiffness (N/m) defined as the partial derivative of muscle force w.r.t. More...

double	getFiberActivePower (const SimTK::State &s) const
	get the current active fiber power (W) More...

double	getFiberPassivePower (const SimTK::State &s) const
	get the current passive fiber power (W) More...

double	getTendonPower (const SimTK::State &s) const
	get the current tendon power (W) More...

double	getMusclePower (const SimTK::State &s) const
	get the current muscle power (W) More...

double	getStress (const SimTK::State &s) const
	get the stress in the muscle (part of the Actuator interface as well) More...

void	setExcitation (SimTK::State &s, double excitation) const
	set the excitation (control) for this muscle. More...

double	getExcitation (const SimTK::State &s) const

void	equilibrate (SimTK::State &s) const
	Find and set the equilibrium state of the muscle (if any) More...

Public Member Functions inherited from OpenSim::PathActuator
	PathActuator ()

GeometryPath &	updGeometryPath ()

const GeometryPath &	getGeometryPath () const

virtual bool	hasGeometryPath () const
	Return a flag indicating whether the Force is applied along a Path. More...

void	setOptimalForce (double aOptimalForce)

double	getOptimalForce () const

virtual double	getLength (const SimTK::State &s) const

virtual double	getLengtheningSpeed (const SimTK::State &s) const

virtual double	getPower (const SimTK::State &s) const

void	addNewPathPoint (const std::string &proposedName, OpenSim::Body &aBody, const SimTK::Vec3 &aPositionOnBody)
	Note that this function does not maintain the State and so should be used only before a valid State is created. More...

virtual double	computeMomentArm (const SimTK::State &s, Coordinate &aCoord) const

virtual void	preScale (const SimTK::State &s, const ScaleSet &aScaleSet)

virtual void	scale (const SimTK::State &s, const ScaleSet &aScaleSet)

virtual const VisibleObject *	getDisplayer () const
	Methods to support making the object displayable in the GUI or Visualizer Implemented only in few objects. More...

virtual void	updateDisplayer (const SimTK::State &s) const
	In case the ModelComponent has a visual representation (VisualObject), override this method to update it. More...

	OpenSim_DECLARE_UNNAMED_PROPERTY (GeometryPath,"The set of points defining the path of the muscle.")

	OpenSim_DECLARE_PROPERTY (optimal_force, double,"The maximum force this actuator can produce.")

Public Member Functions inherited from OpenSim::Actuator
	Actuator ()

virtual double	getControl (const SimTK::State &s) const
	Convenience method to set controls given scalar (double) valued control. More...

virtual int	numControls () const

virtual void	setForce (const SimTK::State &s, double aForce) const

virtual double	getForce (const SimTK::State &s) const

virtual void	setSpeed (const SimTK::State &s, double aspeed) const

virtual double	getSpeed (const SimTK::State &s) const

void	setMinControl (const double &aMinControl)

double	getMinControl () const

void	setMaxControl (const double &aMaxControl)

double	getMaxControl () const

void	overrideForce (SimTK::State &s, bool flag) const
	Enable/disable an Actuator's override force. More...

bool	isForceOverriden (const SimTK::State &s) const
	return Actuator's override status More...

void	setOverrideForce (SimTK::State &s, double value) const
	set the force value used when the override is true More...

double	getOverrideForce (const SimTK::State &s) const
	return override force More...

	OpenSim_DECLARE_PROPERTY (min_control, double,"Minimum allowed value for control signal. Used primarily when solving ""for control values.")
	Default is -Infinity (no limit). More...

	OpenSim_DECLARE_PROPERTY (max_control, double,"Maximum allowed value for control signal. Used primarily when solving ""for control values.")
	Default is Infinity (no limit). More...

Public Member Functions inherited from OpenSim::Actuator_
	Actuator_ ()

virtual const SimTK::Vector	getDefaultControls ()
	Actuator default controls are zero. More...

virtual const SimTK::VectorView_< double >	getControls (const SimTK::State &s) const

virtual void	getControls (const SimTK::Vector &modelControls, SimTK::Vector &actuatorControls) const
	Convenience methods for getting, setting and adding to actuator controls from/into the model controls. More...

virtual void	setControls (const SimTK::Vector &actuatorControls, SimTK::Vector &modelControls) const
	set actuator controls subvector into the right slot in the system-wide model controls More...

virtual void	addInControls (const SimTK::Vector &actuatorControls, SimTK::Vector &modelControls) const
	add actuator controls to the values already occupying the slot in the system-wide model controls More...

virtual void	computeEquilibrium (SimTK::State &s) const

Public Member Functions inherited from OpenSim::Force
	Force (const Force &aForce)
	Implements a copy constructor just so it can invalidate the SimTK::Force index after copying. More...

Force &	operator= (const Force &aForce)
	Implements a copy assignment operator just so it can invalidate the SimTK::Force index after the assignment. More...

bool	isDisabled (const SimTK::State &s) const
	Return if the Force is disabled or not. More...

void	setDisabled (SimTK::State &s, bool disabled) const
	Set the Force as disabled (true) or not (false). More...

	OpenSim_DECLARE_PROPERTY (isDisabled, bool,"Flag indicating whether the force is disabled or not. Disabled means"" that the force is not active in subsequent dynamics realizations.")
	A Force element is active (enabled) by default. More...

Public Member Functions inherited from OpenSim::ModelComponent
	ModelComponent ()
	Default constructor. More...

	ModelComponent (const std::string &aFileName, bool aUpdateFromXMLNode=true) SWIG_DECLARE_EXCEPTION
	Construct ModelComponent from an XML file. More...

	ModelComponent (SimTK::Xml::Element &aNode)
	Construct ModelComponent from a specific node in an XML document. More...

	ModelComponent (const ModelComponent &source)
	Construct ModelComponent with its contents copied from another ModelComponent; this is a deep copy so nothing is shared with the source after the copy. More...

virtual	~ModelComponent ()
	Destructor is virtual to allow concrete model component cleanup. More...

ModelComponent &	operator= (const ModelComponent &aModelComponent)
	Assignment operator to copy contents of an existing component. More...

const Model &	getModel () const
	Get a const reference to the Model this component is part of. More...

Model &	updModel ()
	Get a modifiable reference to the Model this component is part of. More...

virtual int	getNumStateVariables () const
	Get the number of "Continuous" state variables maintained by the ModelComponent and its specified subcomponents. More...

int	getModelingOption (const SimTK::State &state, const std::string &name) const
	Get a ModelingOption flag for this ModelComponent by name. More...

void	setModelingOption (SimTK::State &state, const std::string &name, int flag) const
	Set the value of a ModelingOption flag for this ModelComponent. More...

double	getStateVariable (const SimTK::State &state, const std::string &name) const
	Get the value of a state variable allocated by this ModelComponent. More...

void	setStateVariable (SimTK::State &state, const std::string &name, double value) const
	Set the value of a state variable allocated by this ModelComponent by name. More...

double	getDiscreteVariable (const SimTK::State &state, const std::string &name) const
	Get the value of a discrete variable allocated by this ModelComponent by name. More...

void	setDiscreteVariable (SimTK::State &state, const std::string &name, double value) const
	Set the value of a discrete variable allocated by this ModelComponent by name. More...

template<typename T >
const T &	getCacheVariable (const SimTK::State &state, const std::string &name) const
	Get the value of a cache variable allocated by this ModelComponent by name. More...

template<typename T >
T &	updCacheVariable (const SimTK::State &state, const std::string &name) const
	Obtain a writable cache variable value allocated by this ModelComponent by name. More...

void	markCacheVariableValid (const SimTK::State &state, const std::string &name) const
	After updating a cache variable value allocated by this ModelComponent, you can mark its value as valid, which will not change until the realization stage falls below the minimum set at the time the cache variable was created. More...

void	markCacheVariableInvalid (const SimTK::State &state, const std::string &name) const
	Mark a cache variable value allocated by this ModelComponent as invalid. More...

bool	isCacheVariableValid (const SimTK::State &state, const std::string &name) const
	Enables the to monitor the validity of the cache variable value using the returned flag. More...

template<typename T >
void	setCacheVariable (const SimTK::State &state, const std::string &name, const T &value) const
	Set cache variable value allocated by this ModelComponent by name. More...

Public Member Functions inherited from OpenSim::Object
virtual	~Object ()
	Virtual destructor for cleanup. More...

virtual Object *	clone () const =0
	Create a new heap-allocated copy of the concrete object to which this Object refers. More...

virtual const std::string &	getConcreteClassName () const =0
	Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string. More...

virtual VisibleObject *	updDisplayer ()
	get Non const pointer to VisibleObject More...

bool	isEqualTo (const Object &aObject) const
	Equality operator wrapper for use from languages not supporting operator overloading. More...

Object &	operator= (const Object &aObject)
	Copy assignment copies he base class fields, including the properties. More...

virtual bool	operator== (const Object &aObject) const
	Determine if two objects are equal. More...

virtual bool	operator< (const Object &aObject) const
	Provide an ordering for objects so they can be put in sorted containers. More...

void	setName (const std::string &name)
	Set the name of the Object. More...

const std::string &	getName () const
	Get the name of this Object. More...

void	setDescription (const std::string &description)
	Set description, a one-liner summary. More...

const std::string &	getDescription () const
	Get description, a one-liner summary. More...

const std::string &	getAuthors () const
	Get Authors of this Object. More...

void	setAuthors (const std::string &authors)
	Set Authors of this object, call this method in your constructor if needed. More...

const std::string &	getReferences () const
	Get references or publications to cite if using this object. More...

void	setReferences (const std::string &references)
	Set references or publications to cite if using this object. More...

int	getNumProperties () const
	Determine how many properties are stored with this Object. More...

const AbstractProperty &	getPropertyByIndex (int propertyIndex) const
	Get a const reference to a property by its index number, returned as an AbstractProperty. More...

AbstractProperty &	updPropertyByIndex (int propertyIndex)
	Get a writable reference to a property by its index number, returned as an AbstractProperty. More...

bool	hasProperty (const std::string &name) const
	Return true if this Object has a property of any type with the given name, which must not be empty. More...

const AbstractProperty &	getPropertyByName (const std::string &name) const
	Get a const reference to a property by its name, returned as an AbstractProperty. More...

AbstractProperty &	updPropertyByName (const std::string &name)
	Get a writable reference to a property by its name, returned as an AbstractProperty. More...

template<class T >
bool	hasProperty () const
	Return true if this Object contains an unnamed, one-object property that contains objects of the given template type T. More...

template<class T >
const Property< T > &	getProperty (const PropertyIndex &index) const
	Get property of known type Property<T> as a const reference; the property must be present and have the right type. More...

template<class T >
Property< T > &	updProperty (const PropertyIndex &index)
	Get property of known type Property<T> as a writable reference; the property must be present and have the right type. More...

void	setObjectIsUpToDateWithProperties ()
	When an object is initialized using the current values of its properties, it can set a flag indicating that it is up to date. More...

bool	isObjectUpToDateWithProperties () const
	Returns `true` if no property's value has changed since the last time setObjectIsUpToDateWithProperties() was called. More...

void	readObjectFromXMLNodeOrFile (SimTK::Xml::Element &objectElement, int versionNumber)
	We're given an XML element from which we are to populate this Object. More...

virtual void	updateXMLNode (SimTK::Xml::Element &parent)
	Serialize this object into the XML node that represents it. More...

bool	getInlined () const
	Inlined means an in-memory Object that is not associated with an XMLDocument. More...

void	setInlined (bool aInlined, const std::string &aFileName="")
	Mark this as inlined or not and optionally provide a file name to associate with the new XMLDocument for the non-inline case. More...

std::string	getDocumentFileName () const
	If there is a document associated with this object then return the file name maintained by the document. More...

void	setAllPropertiesUseDefault (bool aUseDefault)

bool	print (const std::string &fileName)
	Write this Object into an XML file of the given name; conventionally the suffix to use is ".osim". More...

std::string	dump (bool dumpName=false)
	dump the XML representation of this Object into an std::string and return it. More...

void	clearObjectIsUpToDateWithProperties ()
	For testing or debugging purposes, manually clear the "object is up to date with respect to properties" flag. More...

virtual bool	isA (const char *type) const
	The default implementation returns true only if the supplied string is "Object"; each Object-derived class overrides this to match its own class name. More...

const std::string &	toString () const
	Wrapper to be used on Java side to display objects in tree; this returns just the object's name. More...

PropertySet &	getPropertySet ()
	OBSOLETE: Get a reference to the PropertySet maintained by the Object. More...

const PropertySet &	getPropertySet () const

Protected Member Functions
void	postScale (const SimTK::State &s, const ScaleSet &aScaleSet)

double	clampActivation (double activation) const

double	calcActivationDerivative (double activation, double excitation) const
	Calculate activation rate. More...

double	getStateVariableDeriv (const SimTK::State &s, const std::string &aStateName) const
	Gets the derivative of an actuator state by index. More...

void	setStateVariableDeriv (const SimTK::State &s, const std::string &aStateName, double aValue) const
	Sets the derivative of an actuator state specified by name. More...

void	calcMuscleLengthInfo (const SimTK::State &s, MuscleLengthInfo &mli) const override
	Calculate the position-related values associated with the muscle state (fiber and tendon lengths, normalized lengths, pennation angle, etc.). More...

void	calcFiberVelocityInfo (const SimTK::State &s, FiberVelocityInfo &fvi) const override
	Calculate the velocity-related values associated with the muscle state (fiber and tendon velocities, normalized velocities, pennation angular velocity, etc.). More...

void	calcMuscleDynamicsInfo (const SimTK::State &s, MuscleDynamicsInfo &mdi) const override
	Calculate the dynamics-related values associated with the muscle state (from the active- and passive-force-length curves, the force-velocity curve, and the tendon-force-length curve). More...

void	calcMusclePotentialEnergyInfo (const SimTK::State &s, MusclePotentialEnergyInfo &mpei) const override
	Calculate the potential energy values associated with the muscle. More...

void	connectToModel (Model &model) override
	Sets up the ModelComponent from the model, if necessary. More...

void	addToSystem (SimTK::MultibodySystem &system) const override
	Creates the ModelComponent so that it can be used in simulation. More...

void	initStateFromProperties (SimTK::State &s) const override
	Initializes the state of the ModelComponent. More...

void	setPropertiesFromState (const SimTK::State &s) override
	Sets the default state for the ModelComponent. More...

SimTK::Vector	computeStateVariableDerivatives (const SimTK::State &s) const override
	Computes state variable derivatives. More...

Protected Member Functions inherited from OpenSim::Muscle
const MuscleLengthInfo &	getMuscleLengthInfo (const SimTK::State &s) const
	Developer Access to intermediate values calculate by the muscle model. More...

MuscleLengthInfo &	updMuscleLengthInfo (const SimTK::State &s) const

const FiberVelocityInfo &	getFiberVelocityInfo (const SimTK::State &s) const

FiberVelocityInfo &	updFiberVelocityInfo (const SimTK::State &s) const

const MuscleDynamicsInfo &	getMuscleDynamicsInfo (const SimTK::State &s) const

MuscleDynamicsInfo &	updMuscleDynamicsInfo (const SimTK::State &s) const

const MusclePotentialEnergyInfo &	getMusclePotentialEnergyInfo (const SimTK::State &s) const

MusclePotentialEnergyInfo &	updMusclePotentialEnergyInfo (const SimTK::State &s) const

void	computeForce (const SimTK::State &state, SimTK::Vector_< SimTK::SpatialVec > &bodyForces, SimTK::Vector &generalizedForce) const override
	Force interface applies tension to bodies, and Muscle also checks that applied muscle tension is not negative. More...

double	computePotentialEnergy (const SimTK::State &state) const override
	Potential energy stored by the muscle. More...

SimTK::Vec3	computePathColor (const SimTK::State &state) const override
	Override PathActuator virtual to calculate a preferred color for the muscle path based on activation. More...

void	connectToModel (Model &aModel) override
	Model Component creation interface. More...

void	addToSystem (SimTK::MultibodySystem &system) const override
	Default is to create a ForceAdapter which is a SimTK::Force::Custom as the underlying computational component. More...

void	setPropertiesFromState (const SimTK::State &s) override
	Subclass should override; be sure to invoke Force::setPropertiesFromState() at the beginning of the overriding method. More...

void	initStateFromProperties (SimTK::State &state) const override
	Subclass should override; be sure to invoke Force::initStateFromProperties() at the beginning of the overriding method. More...

virtual void	updateGeometry (const SimTK::State &s)

Protected Member Functions inherited from OpenSim::PathActuator
void	connectToModel (Model &aModel) override
	Extension of parent class method; derived classes may extend further. More...

void	realizeDynamics (const SimTK::State &state) const override
	Extension of parent class method; derived classes may extend further. More...

Protected Member Functions inherited from OpenSim::Actuator
double	computeOverrideForce (const SimTK::State &s) const

OpenSim::Array< std::string >	getRecordLabels () const
	Methods to query a Force for the value actually applied during simulation The names of the quantities (column labels) is returned by this first function getRecordLabels() More...

OpenSim::Array< double >	getRecordValues (const SimTK::State &state) const
	Given SimTK::State object extract all the values necessary to report forces, application location frame, etc. More...

Protected Member Functions inherited from OpenSim::Actuator_
virtual void	updateGeometry ()

Protected Member Functions inherited from OpenSim::Force
	Force ()
	Default constructor sets up Force-level properties; can only be called from a derived class constructor. More...

	Force (SimTK::Xml::Element &node)
	Deserialization from XML, necessary so that derived classes can (de)serialize. More...

void	applyForceToPoint (const SimTK::State &state, const OpenSim::Body &body, const SimTK::Vec3 &point, const SimTK::Vec3 &force, SimTK::Vector_< SimTK::SpatialVec > &bodyForces) const
	Apply a force at a particular point (a "station") on a given body. More...

void	applyTorque (const SimTK::State &state, const OpenSim::Body &body, const SimTK::Vec3 &torque, SimTK::Vector_< SimTK::SpatialVec > &bodyForces) const
	Apply a torque to a particular body. More...

void	applyGeneralizedForce (const SimTK::State &state, const Coordinate &coord, double force, SimTK::Vector &generalizedForces) const
	Apply a generalized force. More...

Protected Member Functions inherited from OpenSim::ModelComponent
virtual void	generateDecorations (bool fixed, const ModelDisplayHints &hints, const SimTK::State &state, SimTK::Array_< SimTK::DecorativeGeometry > &appendToThis) const
	Optional method for generating arbitrary display geometry that reflects this ModelComponent at the specified state. More...

virtual void	realizeTopology (SimTK::State &state) const
	Obtain state resources that are needed unconditionally, and perform computations that depend only on the system topology. More...

virtual void	realizeModel (SimTK::State &state) const
	Obtain state resources that may be needed, depending on modeling options, and perform computations that depend only on topology and selected modeling options. More...

virtual void	realizeInstance (const SimTK::State &state) const
	Perform computations that depend only on instance variables, like lengths and masses. More...

virtual void	realizeTime (const SimTK::State &state) const
	Perform computations that depend only on time and earlier stages. More...

virtual void	realizePosition (const SimTK::State &state) const
	Perform computations that depend only on position-level state variables and computations performed in earlier stages (including time). More...

virtual void	realizeVelocity (const SimTK::State &state) const
	Perform computations that depend only on velocity-level state variables and computations performed in earlier stages (including position, and time). More...

virtual void	realizeAcceleration (const SimTK::State &state) const
	Perform computations that may depend on applied forces. More...

virtual void	realizeReport (const SimTK::State &state) const
	Perform computations that may depend on anything but are only used for reporting and cannot affect subsequent simulation behavior. More...

void	includeAsSubComponent (ModelComponent *aComponent)
	Include another ModelComponent as a Subcomponent of this ModelComponent. More...

void	addModelingOption (const std::string &optionName, int maxFlagValue) const
	Add a modeling option (integer flag stored in the State) for use by this ModelComponent. More...

void	addStateVariable (const std::string &stateVariableName, SimTK::Stage invalidatesStage=SimTK::Stage::Dynamics) const
	Add a continuous system state variable belonging to this ModelComponent, and assign a name by which to refer to it. More...

void	addDiscreteVariable (const std::string &discreteVariableName, SimTK::Stage invalidatesStage) const
	Add a system discrete variable belonging to this ModelComponent, give it a name by which it can be referenced, and declare the lowest Stage that should be invalidated if this variable's value is changed. More...

template<class T >
void	addCacheVariable (const std::string &cacheVariableName, const T &variablePrototype, SimTK::Stage dependsOnStage) const
	Add a state cache entry belonging to this ModelComponent to hold calculated values that must be automatically invalidated when certain state values change. More...

const int	getStateIndex (const std::string &name) const
	Get the index of a ModelComponent's continuous state variable in the Subsystem for allocations. More...

const SimTK::DiscreteVariableIndex	getDiscreteVariableIndex (const std::string &name) const
	Get the index of a ModelComponent's discrete variable in the Subsystem for allocations. More...

const SimTK::CacheEntryIndex	getCacheVariableIndex (const std::string &name) const
	Get the index of a ModelComponent's cache variable in the Subsystem for allocations. More...

Protected Member Functions inherited from OpenSim::Object
	Object ()
	The default constructor is only for use by constructors of derived types. More...

	Object (const std::string &fileName, bool aUpdateFromXMLNode=true) SWIG_DECLARE_EXCEPTION
	Constructor from a file, to be called from other constructors that take a file as input. More...

	Object (const Object &source)
	Copy constructor is invoked automatically by derived classes with default copy constructors; otherwise it must be invoked explicitly. More...

	Object (SimTK::Xml::Element &aElement)
	Construct the base class portion of an Object from a given Xml element that describes this Object. More...

template<class T >
PropertyIndex	addProperty (const std::string &name, const std::string &comment, const T &value)
	Define a new single-value property of known type T, with the given name, associated comment, and initial value. More...

template<class T >
PropertyIndex	addOptionalProperty (const std::string &name, const std::string &comment)
	Add an optional property, meaning it can contain either no value or a single value. More...

template<class T >
PropertyIndex	addOptionalProperty (const std::string &name, const std::string &comment, const T &value)
	Add an optional property, meaning it can contain either no value or a single value. More...

template<class T >
PropertyIndex	addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize)
	Define a new list-valued property of known type T, with the given name, associated comment, minimum (==0) and maximum (>0) allowable list lengths, and a zero-length initial value. More...

template<class T , template< class > class Container>
PropertyIndex	addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize, const Container< T > &valueList)
	Define a new list-valued property as above, but assigning an initial value via some templatized container class that supports size() and indexing. More...

PropertyIndex	getPropertyIndex (const std::string &name) const
	Look up a property by name and return its PropertyIndex if it is found. More...

template<class T >
PropertyIndex	getPropertyIndex () const
	Look up an unnamed property by the type of object it contains, and return its PropertyIndex if it is found. More...

void	updateFromXMLDocument ()
	Use this method only if you're deserializing from a file and the object is at the top level; that is, primarily in constructors that take a file name as input. More...

void	setDocument (XMLDocument *doc)
	Unconditionally set the XMLDocument associated with this object. More...

const XMLDocument *	getDocument () const
	Get a const pointer to the document (if any) associated with this object. More...

XMLDocument *	updDocument ()
	Get a writable pointer to the document (if any) associated with this object. More...

Additional Inherited Members
Static Public Member Functions inherited from OpenSim::Object
static void	registerType (const Object &defaultObject)
	Register an instance of a class; if the class is already registered it will be replaced. More...

static void	renameType (const std::string &oldTypeName, const std::string &newTypeName)
	Support versioning by associating the current Object type with an old name. More...

static const Object *	getDefaultInstanceOfType (const std::string &concreteClassName)
	Return a pointer to the default instance of the registered (concrete) Object whose class name is given, or NULL if the type is not registered. More...

template<class T >
static bool	isObjectTypeDerivedFrom (const std::string &concreteClassName)
	Return true if the given concrete object type represents a subclass of the template object type T, and thus could be referenced with a T*. More...

static Object *	newInstanceOfType (const std::string &concreteClassName)
	Create a new instance of the concrete Object type whose class name is given as concreteClassName. More...

static void	getRegisteredTypenames (Array< std::string > &typeNames)
	Retrieve all the typenames registered so far. More...

template<class T >
static void	getRegisteredObjectsOfGivenType (ArrayPtrs< T > &rArray)
	Return an array of pointers to the default instances of all registered (concrete) Object types that derive from a given Object-derived type that does not have to be concrete. More...

static void	PrintPropertyInfo (std::ostream &os, const std::string &classNameDotPropertyName)
	Dump formatted property information to a given output stream, useful for creating a "help" facility for registered objects. More...

static void	PrintPropertyInfo (std::ostream &os, const std::string &className, const std::string &propertyName)
	Same as the other signature but the class name and property name are provided as two separate strings. More...

static Object *	makeObjectFromFile (const std::string &fileName)
	Create an OpenSim object whose type is based on the tag at the root node of the XML file passed in. More...

static const std::string &	getClassName ()
	Return the name of this class as a string; i.e., "Object". More...

static void	setSerializeAllDefaults (bool shouldSerializeDefaults)
	Static function to control whether all registered objects and their properties are written to the defaults section of output files rather than only those values for which the default was explicitly overwritten when read in from an input file or set programmatically. More...

static bool	getSerializeAllDefaults ()
	Report the value of the "serialize all defaults" flag. More...

static bool	isKindOf (const char *type)
	Returns true if the passed-in string is "Object"; each Object-derived class defines a method of this name for its own class name. More...

static void	setDebugLevel (int newLevel)
	Set the debug level to get verbose output. More...

static int	getDebugLevel ()
	Get current setting of debug level. More...

static Object *	SafeCopy (const Object *aObject)
	Use the clone() method to duplicate the given object unless the pointer is null in which case null is returned. More...

static void	RegisterType (const Object &defaultObject)
	OBSOLETE alternate name for registerType(). More...

static void	RenameType (const std::string &oldName, const std::string &newName)
	OBSOLETE alternate name for renameType(). More...

Static Public Attributes inherited from OpenSim::Object
static const std::string	DEFAULT_NAME
	Name used for default objects when they are serialized. More...

Protected Attributes inherited from OpenSim::Muscle
double	_muscleWidth
	The assumed fixed muscle-width from which the fiber pennation angle can be calculated. More...

double	_maxIsometricForce
	to support deprecated muscles More...

double	_optimalFiberLength

double	_pennationAngleAtOptimal

double	_tendonSlackLength

Related Functions inherited from OpenSim::Object
#define	OpenSim_DECLARE_CONCRETE_OBJECT(ConcreteClass, SuperClass)
	Macro to be included as the first line of the class declaration for any non-templatized, concrete class that derives from OpenSim::Object. More...

#define	OpenSim_DECLARE_ABSTRACT_OBJECT(ConcreteClass, SuperClass)
	Macro to be included as the first line of the class declaration for any still-abstract class that derives from OpenSim::Object. More...

#define	OpenSim_DECLARE_CONCRETE_OBJECT_T(ConcreteClass, TArg, SuperClass)
	Macro to be included as the first line of the class declaration for any templatized, concrete class that derives from OpenSim::Object, like Set<T>. More...

#define	OpenSim_DECLARE_ABSTRACT_OBJECT_T(ConcreteClass, TArg, SuperClass)
	Macro to be included as the first line of the class declaration for any templatized, still-abstract class that derives from OpenSim::Object. More...

Detailed Description

This class implements a configurable equilibrium muscle model, as described in Millard et al. (2013).

An equilibrium model assumes that the forces generated by the fiber and tendon are equal:

$f_{ISO}\Big(\mathbf{a}(t) \mathbf{f}_L(\hat{l}_{CE}) \mathbf{f}_V(\hat{v}_{CE}) + \mathbf{f}_{PE}(\hat{l}_{CE}) + \beta \hat{v}_{CE}\Big) \cos \phi - f_{ISO}\mathbf{f}_{SE}(\hat{l}_{T}) = 0$

This model can be simulated in several configurations by adjusting three flags:

ignore_tendon_compliance: set to true to make the tendon rigid. This assumption is usually reasonable for short tendons, and can result in a performance improvement by eliminating high-frequency dynamics and removing the fiber length from the state vector.

ignore_activation_dynamics: set to true to use the excitation input as the activation signal. This results in faster simulations by reducing the size of the state vector.

fiber_damping: set to a value greater than 0.001 to include fiber damping in the model. The addition of damping reduces simulation time while allowing the muscle model to be more physiological (it can have an activation of zero, its active-force-length curve can go to zero, and its force-velocity curve can be asymptotic).

Elastic Tendon, No Fiber Damping

The most typical configuration used in the literature is to simulate a muscle with an elastic tendon, full fiber dynamics, and activation dynamics. The resulting formulation suffers from three singularities: $\mathbf{a}(t) \rightarrow 0$ , $\phi \rightarrow 90^\circ$ , and $\mathbf{f}_L(\hat{l}_{CE}) \rightarrow 0$ . These situations are all handled in this model to ensure that it does not produce singularities and does not result in intolerably long simulation times.

Numerical singularities arise from the manner in which the equilibrium equation is rearranged to yield an ordinary differential equation (ODE). The above equation is rearranged to isolate $\mathbf{f}_V(\hat{v}_{CE})$ . We then invert to solve for $\hat{v}_{CE}$ , which is then numerically integrated during a simulation:

$\hat{v}_{CE} = \mathbf{f}_V ^{-1} \Big( \frac{ ( \mathbf{f}_{SE}(\hat{l}_{T}) ) / \cos \phi - \mathbf{f}_{PE}(\hat{l}_{CE}) } { \mathbf{a}(t) \mathbf{f}_L(\hat{l}_{CE})} \Big)$

The above equation becomes numerically stiff when terms in the denominator approach zero (when $\mathbf{a}(t) \rightarrow 0$ , $\phi \rightarrow 90^\circ$ , or $\mathbf{f}_L(\hat{l}_{CE}) \rightarrow 0$ ) or, additionally, when the slope of $\mathbf{f}_V ^{-1}$ is steep (which occurs at fiber velocities close to the maximum concentric and maximum eccentric fiber velocities).

Singularities can be managed by ensuring that the muscle model is always activated ( $\mathbf{a}(t) > 0$ ), the fiber will stop contracting when a pennation angle of 90 degrees is approached ( $\phi < 90^\circ$ ), and the fiber will also stop contracting as its length approaches a lower bound ( $\hat{l}_{CE} > lowerbound$ ), which is typically around half the fiber's resting length (to ensure $\mathbf{f}_L(\hat{l}_{CE}) > 0$ ). The fiber is prevented from reaching unphysiological lengths or its maximum pennation angle using a unilateral constraint. Additionally, the force-velocity curve is modified so that it is invertible.

When an elastic tendon without fiber damping is selected, the minimum active-force-length value is set to 0.1, the minimum permissible activation is set to 0.01, and the maximum permissible pennation angle is set to acos(0.1) or 84.3 degrees. This is done as a convenience for the user to prevent the model from taking an unreasonable amount of time to simulate.

(Rigid Tendon) or (Elastic Tendon with Fiber Damping)

Neither of these formulations has any singularities. The lower bound of the active-force-length curve can be zero (min( $\mathbf{f}_L(\hat{l}_{CE})) = 0$ ), activation can be zero (i.e., the muscle can be turned off completely), and the force-velocity curve need not be invertible.

The rigid tendon formulation removes the singularities by ignoring the elasticity of the tendon. This assumption is reasonable for many muscles, but it is up to the user to determine whether this assumption is valid.

The formulation that uses an elastic tendon with fiber damping removes singularities by solving the equilibrium equation with Newton's method. This is possible because the partial derivative of the equilibrium equation with respect to fiber velocity is always positive if $\beta > 0$ and, thus, Newton's method can find a solution to the equilibrium equation.

When either of these singularity-free formulations is selected, the minimum active-force-length value and the minimum permissible activation are set to zero. This is done as a convenience for the user, as these changes make the results of the model more realistic yet incur no performance penality. The maximum pennation angle is left as acos(0.1) or 84.3 degrees, as allowing higher pennation angles results in an increasingly stiff fiber velocity state as pennation angle increases.

Usage

This object should be updated through the set methods provided.

Example

double maxIsometricForce  = 5000;   //N
double optimalFiberLength = 0.025;  //m
double tendonSlackLength  = 0.25;   //m
double pennationAngle     = 0.5;    //rad
bool ignoreTendonCompliance   = false;
bool ignoreActivationDynamics = false;
double dampingCoefficient     = 0.001;
Millard2012EquilibriumMuscle myMuscle("myMuscle",
                                      maxIsometricForce,
                                      optimalFiberLength,
                                      tendonSlackLength,
                                      pennationAngle);
myMuscle.setMuscleConfiguration(ignoreTendonCompliance,
                                ignoreActivationDynamics,
                                dampingCoefficient);

Please refer to the doxygen for more information on the properties that are objects themselves (MuscleFixedWidthPennationModel, ActiveForceLengthCurve, FiberForceLengthCurve, TendonForceLengthCurve, and ForceVelocityInverseCurve).

Reference

Millard, M., Uchida, T., Seth, A., Delp, S.L. (2013) Flexing computational muscle: modeling and simulation of musculotendon dynamics. ASME Journal of Biomechanical Engineering 135(2):021005. http://dx.doi.org/10.1115/1.4023390.

Author: Matt Millard; Tom Uchida; Ajay Seth

Constructor & Destructor Documentation

OpenSim::Millard2012EquilibriumMuscle::Millard2012EquilibriumMuscle ( )

Default constructor.

Produces a non-functional empty muscle.

OpenSim::Millard2012EquilibriumMuscle::Millard2012EquilibriumMuscle	(	const std::string &	aName,
		double	aMaxIsometricForce,
		double	aOptimalFiberLength,
		double	aTendonSlackLength,
		double	aPennationAngle
	)

Constructs a functional muscle using default curves and activation model parameters.

The tendon is assumed to be elastic, full fiber dynamics are solved, and activation dynamics are included.

Parameters

aName	The name of the muscle.
aMaxIsometricForce	The force generated by the muscle when fully activated at its optimal resting length with a contraction velocity of zero.
aOptimalFiberLength	The optimal length of the muscle fiber.
aTendonSlackLength	The resting length of the tendon.
aPennationAngle	The angle of the fiber (in radians) relative to the tendon when the fiber is at its optimal resting length.

Member Function Documentation

void OpenSim::Millard2012EquilibriumMuscle::addToSystem ( SimTK::MultibodySystem & system) const

overrideprotectedvirtual

Creates the ModelComponent so that it can be used in simulation.

Reimplemented from OpenSim::Actuator.

double OpenSim::Millard2012EquilibriumMuscle::calcActivationDerivative	(	double	activation,
		double	excitation
	)		const

protected

Calculate activation rate.

void OpenSim::Millard2012EquilibriumMuscle::calcFiberVelocityInfo	(	const SimTK::State &	s,
		FiberVelocityInfo &	fvi
	)		const

overrideprotectedvirtual

Calculate the velocity-related values associated with the muscle state (fiber and tendon velocities, normalized velocities, pennation angular velocity, etc.).

Reimplemented from OpenSim::Muscle.

void OpenSim::Millard2012EquilibriumMuscle::calcMuscleDynamicsInfo	(	const SimTK::State &	s,
		MuscleDynamicsInfo &	mdi
	)		const

overrideprotectedvirtual

Calculate the dynamics-related values associated with the muscle state (from the active- and passive-force-length curves, the force-velocity curve, and the tendon-force-length curve).

Reimplemented from OpenSim::Muscle.

void OpenSim::Millard2012EquilibriumMuscle::calcMuscleLengthInfo	(	const SimTK::State &	s,
		MuscleLengthInfo &	mli
	)		const

overrideprotectedvirtual

Calculate the position-related values associated with the muscle state (fiber and tendon lengths, normalized lengths, pennation angle, etc.).

Reimplemented from OpenSim::Muscle.

void OpenSim::Millard2012EquilibriumMuscle::calcMusclePotentialEnergyInfo	(	const SimTK::State &	s,
		MusclePotentialEnergyInfo &	mpei
	)		const

overrideprotectedvirtual

Calculate the potential energy values associated with the muscle.

Reimplemented from OpenSim::Muscle.

double OpenSim::Millard2012EquilibriumMuscle::clampActivation ( double activation) const

protected

Returns: Activation clamped to the permissible range (i.e., between minimum_activation and 1.0).

double OpenSim::Millard2012EquilibriumMuscle::computeActuation ( const SimTK::State & s) const

finalvirtual

Parameters

[in] s The state of the system.

Returns: The tensile force the muscle is generating (N).

Implements OpenSim::Muscle.

void OpenSim::Millard2012EquilibriumMuscle::computeFiberEquilibriumAtZeroVelocity ( SimTK::State & s) const

overridevirtual

Computes the fiber length such that the fiber and tendon are developing the same force, assuming velocities are zero.

This is a static equilibrium version of computeInitialFiberEquilibrium(). By setting velocities to zero, we obtain a reasonable and robust solution that provides a rough solution for fiber length.

Parameters

[in,out] s The state of the system.

Reimplemented from OpenSim::Muscle.

void OpenSim::Millard2012EquilibriumMuscle::computeInitialFiberEquilibrium ( SimTK::State & s) const

overridevirtual

Computes the fiber length such that the fiber and tendon are developing the same force, distributing the velocity of the entire musculotendon actuator between the fiber and tendon according to their relative stiffnesses.

Parameters

[in,out] s The state of the system.

Implements OpenSim::Muscle.

SimTK::Vector OpenSim::Millard2012EquilibriumMuscle::computeStateVariableDerivatives ( const SimTK::State & s) const

overrideprotectedvirtual

Computes state variable derivatives.

Reimplemented from OpenSim::ModelComponent.

void OpenSim::Millard2012EquilibriumMuscle::connectToModel ( Model & model)

overrideprotectedvirtual

Sets up the ModelComponent from the model, if necessary.

Reimplemented from OpenSim::ModelComponent.

double OpenSim::Millard2012EquilibriumMuscle::getActivationDerivative ( const SimTK::State & s) const

Parameters

s	The state of the system.

Returns: The time derivative of activation.

double OpenSim::Millard2012EquilibriumMuscle::getActivationTimeConstant ( ) const

Returns: The activation time constant (in seconds).

const ActiveForceLengthCurve& OpenSim::Millard2012EquilibriumMuscle::getActiveForceLengthCurve ( ) const

Returns: The ActiveForceLengthCurve used by this model.

double OpenSim::Millard2012EquilibriumMuscle::getDeactivationTimeConstant ( ) const

Returns: The deactivation time constant (in seconds).

double OpenSim::Millard2012EquilibriumMuscle::getDefaultActivation ( ) const

Returns: The default activation level that is used as an initial condition if none is provided by the user.

double OpenSim::Millard2012EquilibriumMuscle::getDefaultFiberLength ( ) const

Returns: The default fiber length that is used as an initial condition if none is provided by the user.

double OpenSim::Millard2012EquilibriumMuscle::getFiberDamping ( ) const

Returns: The fiber damping coefficient.

const FiberForceLengthCurve& OpenSim::Millard2012EquilibriumMuscle::getFiberForceLengthCurve ( ) const

Returns: The FiberForceLengthCurve used by this model.

double OpenSim::Millard2012EquilibriumMuscle::getFiberStiffnessAlongTendon ( const SimTK::State & s) const

Returns: The stiffness of the muscle fibers along the tendon (N/m).

double OpenSim::Millard2012EquilibriumMuscle::getFiberVelocity ( const SimTK::State & s) const

Parameters

s	The state of the system.

Returns: The velocity of the fiber (m/s).

const ForceVelocityCurve& OpenSim::Millard2012EquilibriumMuscle::getForceVelocityCurve ( ) const

Returns: The ForceVelocityCurve used by this model.

double OpenSim::Millard2012EquilibriumMuscle::getMaximumPennationAngle ( ) const

Returns: The maximum pennation angle permitted by this muscle model. Note that this equilibrium model, like all equilibrium models, has a singularity when pennation approaches Pi/2. Thus, the maximum pennation angle must be less than Pi/2.

double OpenSim::Millard2012EquilibriumMuscle::getMinimumActivation ( ) const

Returns: The minimum activation level permitted by the muscle model. Note that this equilibrium model, like all equilibrium models, has a singularity when activation approaches 0, which means that a non-zero lower bound is required.

double OpenSim::Millard2012EquilibriumMuscle::getMinimumFiberLength ( ) const

Returns: The minimum fiber length, which is the maximum of two values: the smallest fiber length allowed by the pennation model, and the minimum fiber length on the active-force-length curve. When the fiber reaches this length, it is constrained to this value until the fiber velocity becomes positive.

double OpenSim::Millard2012EquilibriumMuscle::getMinimumFiberLengthAlongTendon ( ) const

Returns: The minimum fiber length along the tendon, which is the maximum of two values: the smallest fiber length along the tendon permitted by the pennation model, and the minimum fiber length along the tendon on the active-force-length curve. When the fiber length reaches this value, it is constrained to this length along the tendon until the fiber velocity becomes positive.

const MuscleFixedWidthPennationModel& OpenSim::Millard2012EquilibriumMuscle::getPennationModel ( ) const

Returns: The MuscleFixedWidthPennationModel used by this model.

double OpenSim::Millard2012EquilibriumMuscle::getStateVariableDeriv	(	const SimTK::State &	s,
		const std::string &	aStateName
	)		const

protected

Gets the derivative of an actuator state by index.

Parameters

s	The state.
aStateName	The name of the state to get.

Returns: The value of the state derivative.

Array<std::string> OpenSim::Millard2012EquilibriumMuscle::getStateVariableNames ( ) const

finalvirtual

Returns: A string array of the state variable names.

Reimplemented from OpenSim::ModelComponent.

SimTK::SystemYIndex OpenSim::Millard2012EquilibriumMuscle::getStateVariableSystemIndex ( const std::string & stateVariableName) const

finalvirtual

Parameters

stateVariableName The name of the state varaible in question.

Returns: The system index of the state variable in question.

Reimplemented from OpenSim::ModelComponent.

const TendonForceLengthCurve& OpenSim::Millard2012EquilibriumMuscle::getTendonForceLengthCurve ( ) const

Returns: The TendonForceLengthCurve used by this model.

double OpenSim::Millard2012EquilibriumMuscle::getTendonForceMultiplier ( SimTK::State & s) const

Parameters

s	The state of the system.

Returns: The normalized force term associated with the tendon element, $\mathbf{f}_{SE}(\hat{l}_{T})$ , in the equilibrium equation.

bool OpenSim::Millard2012EquilibriumMuscle::getUseFiberDamping ( ) const

Returns: A boolean indicating whether fiber damping is being used.

void OpenSim::Millard2012EquilibriumMuscle::initStateFromProperties ( SimTK::State & s) const

overrideprotectedvirtual

Initializes the state of the ModelComponent.

Reimplemented from OpenSim::Force.

OpenSim::Millard2012EquilibriumMuscle::OpenSim_DECLARE_PROPERTY	(	fiber_damping	,
		double	,
		"The linear damping of the fiber."
	)

OpenSim::Millard2012EquilibriumMuscle::OpenSim_DECLARE_PROPERTY	(	default_activation	,
		double	,
		"Assumed initial activation level if none is assigned."
	)

OpenSim::Millard2012EquilibriumMuscle::OpenSim_DECLARE_PROPERTY	(	default_fiber_length	,
		double	,
		"Assumed initial fiber length if none is assigned."
	)

OpenSim::Millard2012EquilibriumMuscle::OpenSim_DECLARE_PROPERTY	(	activation_time_constant	,
		double	,
		"Activation time constant (in seconds)."
	)

OpenSim::Millard2012EquilibriumMuscle::OpenSim_DECLARE_PROPERTY	(	deactivation_time_constant	,
		double	,
		"Deactivation time constant (in seconds)."
	)

OpenSim::Millard2012EquilibriumMuscle::OpenSim_DECLARE_PROPERTY	(	minimum_activation	,
		double	,
		"Activation lower bound."
	)

OpenSim::Millard2012EquilibriumMuscle::OpenSim_DECLARE_UNNAMED_PROPERTY	(	ActiveForceLengthCurve	,
		"Active-force-length curve."
	)

OpenSim::Millard2012EquilibriumMuscle::OpenSim_DECLARE_UNNAMED_PROPERTY	(	ForceVelocityCurve	,
		"Force-velocity curve."
	)

OpenSim::Millard2012EquilibriumMuscle::OpenSim_DECLARE_UNNAMED_PROPERTY	(	FiberForceLengthCurve	,
		"Passive-force-length curve."
	)

OpenSim::Millard2012EquilibriumMuscle::OpenSim_DECLARE_UNNAMED_PROPERTY	(	TendonForceLengthCurve	,
		"Tendon-force-length curve."
	)

void OpenSim::Millard2012EquilibriumMuscle::postScale	(	const SimTK::State &	s,
		const ScaleSet &	aScaleSet
	)

protectedvirtual

Reimplemented from OpenSim::PathActuator.

void OpenSim::Millard2012EquilibriumMuscle::setActivation	(	SimTK::State &	s,
		double	activation
	)		const

virtual

Parameters

s	The state of the system.
activation	The desired activation level.

Implements OpenSim::Muscle.

void OpenSim::Millard2012EquilibriumMuscle::setActivationTimeConstant ( double activationTimeConstant)

Parameters

activationTimeConstant The activation time constant (in seconds).

void OpenSim::Millard2012EquilibriumMuscle::setActiveForceLengthCurve ( ActiveForceLengthCurve & aActiveForceLengthCurve)

Parameters

aActiveForceLengthCurve The ActiveForceLengthCurve used by the muscle model to scale active fiber force as a function of fiber length.

void OpenSim::Millard2012EquilibriumMuscle::setDeactivationTimeConstant ( double deactivationTimeConstant)

Parameters

deactivationTimeConstant The deactivation time constant (in seconds).

void OpenSim::Millard2012EquilibriumMuscle::setDefaultActivation ( double activation)

Parameters

activation The default activation level that is used to initialize the muscle.

void OpenSim::Millard2012EquilibriumMuscle::setDefaultFiberLength ( double fiberLength)

Parameters

fiberLength The default fiber length that is used to initialize the muscle.

void OpenSim::Millard2012EquilibriumMuscle::setFiberDamping ( double dampingCoefficient)

Parameters

dampingCoefficient Define the fiber damping coefficient.

void OpenSim::Millard2012EquilibriumMuscle::setFiberForceLengthCurve ( FiberForceLengthCurve & aFiberForceLengthCurve)

Parameters

aFiberForceLengthCurve The FiberForceLengthCurve used by the muscle model to calculate the passive force the muscle fiber generates as a function of fiber length.

void OpenSim::Millard2012EquilibriumMuscle::setFiberLength	(	SimTK::State &	s,
		double	fiberLength
	)		const

Parameters

[out]	s	The state of the system.
	fiberLength	The desired fiber length (m).

void OpenSim::Millard2012EquilibriumMuscle::setForceVelocityCurve ( ForceVelocityCurve & aForceVelocityCurve)

Parameters

aForceVelocityCurve The ForceVelocityCurve used by the muscle model to calculate the derivative of fiber length.

void OpenSim::Millard2012EquilibriumMuscle::setMinimumActivation ( double minimumActivation)

Parameters

minimumActivation The minimum permissible activation level.

void OpenSim::Millard2012EquilibriumMuscle::setMuscleConfiguration	(	bool	ignoreTendonCompliance,
		bool	ignoreActivationDynamics,
		double	dampingCoefficient
	)

Parameters

ignoreTendonCompliance	Use a rigid (true) or elastic tendon.
ignoreActivationDynamics	Treat the excitation input as the activation signal (true) or use a first-order activation dynamic model.
dampingCoefficient	Specify the amount of damping to include in the model (must be either 0 or greater than 0.001).

void OpenSim::Millard2012EquilibriumMuscle::setPropertiesFromState ( const SimTK::State & s)

overrideprotectedvirtual

Sets the default state for the ModelComponent.

Reimplemented from OpenSim::Force.

void OpenSim::Millard2012EquilibriumMuscle::setStateVariableDeriv	(	const SimTK::State &	s,
		const std::string &	aStateName,
		double	aValue
	)		const

protected

Sets the derivative of an actuator state specified by name.

Parameters

s	The state.
aStateName	The name of the state to set.
aValue	The value to which the state should be set.

void OpenSim::Millard2012EquilibriumMuscle::setTendonForceLengthCurve ( TendonForceLengthCurve & aTendonForceLengthCurve)

Parameters

aTendonForceLengthCurve The TendonForceLengthCurve used by the muscle model to calculate the force exerted by the tendon as a function of tendon length.

The documentation for this class was generated from the following file:

/home/fitze/repos/opensim/Branches/OpenSim32ForDoxygen/OpenSim/Actuators/Millard2012EquilibriumMuscle.h

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