C3DFileAdapter reads a C3D file into markers and forces tables of type TimeSeriesTableVec3. More...

Inheritance diagram for OpenSim::C3DFileAdapter:

Public Member Functions
C3DFileAdapter *	clone () const override

void	setLocationForForceExpression (const ForceLocation location)
	C3DFileAdpater provides options for expressing the force-plate measurements either as the net force and moments expressed at the ForcePlateOrigin, the CenterOfPressure, or the PointOfWrenchApplication. More...

ForceLocation	getLocationForForceExpression () const
	Retrieve the option for location for force expression. More...

std::shared_ptr< TimeSeriesTableVec3 >	getMarkersTable (DataAdapter::OutputTables &tables)
	Retrieve the TimeSeriesTableVec3 of Markers. More...

std::shared_ptr< TimeSeriesTableVec3 >	getForcesTable (DataAdapter::OutputTables &tables)
	Retrieve the TimeSeriesTableVec3 of Forces. More...

std::shared_ptr< TimeSeriesTable >	getAnalogDataTable (DataAdapter::OutputTables &tables)
	Retrieve the TimeSeriesTable of AnalogData, typically this contains forces, moments. More...

Public Member Functions inherited from OpenSim::FileAdapter
	FileAdapter ()=default

	FileAdapter (const FileAdapter &)=default

	FileAdapter (FileAdapter &&)=default

FileAdapter &	operator= (const FileAdapter &)=default

FileAdapter &	operator= (FileAdapter &&)=default

virtual	~FileAdapter ()=default

Public Member Functions inherited from OpenSim::DataAdapter
	DataAdapter ()=default

	DataAdapter (const DataAdapter &)=default

	DataAdapter (DataAdapter &&)=default

DataAdapter &	operator= (const DataAdapter &)=default

DataAdapter &	operator= (DataAdapter &&)=default

virtual	~DataAdapter ()=default

DataAdapter::OutputTables	read (const std::string &dataSourceSpecification) const
	Public interface to read data from a dataSourceSpecification, typically a file or folder. More...

const std::shared_ptr< AbstractDataTable >	getDataTable (const OutputTables &tables, const std::string tableName)
	Generic interface to retrieve a specific table by name from read result. More...

Public Types
enum	ForceLocation { ForceLocation::OriginOfForcePlate = 0, ForceLocation::CenterOfPressure = 1, ForceLocation::PointOfWrenchApplication = 2 }
	Enumerated list of locations in which read in forces are expressed. More...

typedef std::vector< Event >	EventTable

typedef std::map< std::string, std::shared_ptr< TimeSeriesTableVec3 > >	Tables

Public Types inherited from OpenSim::DataAdapter
typedef std::map< std::string, std::shared_ptr< DataAdapter > >	RegisteredDataAdapters
	Type of the registry containing registered adapters. More...

typedef std::map< std::string, std::shared_ptr< AbstractDataTable > >	OutputTables
	Collection of tables returned by reading methods implemented in derived classes. More...

typedef std::map< std::string, const AbstractDataTable * >	InputTables
	Collection of tables accepted by writing methods implemented in derived classes. More...

Static Public Member Functions
static void	write (const Tables &markerTable, const std::string &fileName)

Static Public Member Functions inherited from OpenSim::FileAdapter
static void	writeFile (const InputTables &tables, const std::string &fileName)
	Write a collection of tables to the given file. More...

static std::string	findExtension (const std::string &filename)
	Find the extension from a filename. More...

static std::vector< std::string >	getNextLine (std::istream &stream, const std::string &delims)
	Get the next line from the stream and tokenize/split the line using the given delimiters. More...

static std::vector< std::string >	tokenize (const std::string &str, const std::string &delims)
	Tokenize/split a given string using the given delimiters. More...

static std::shared_ptr< DataAdapter >	createAdapterFromExtension (const std::string &fileName)
	Create a concerte FileAdapter based on the extension of the passed in file and return it. More...

Static Public Member Functions inherited from OpenSim::DataAdapter
static bool	registerDataAdapter (const std::string &identifier, const DataAdapter &adapter)
	Register a concrete DataAdapter by its unique string identifier. More...

Static Public Attributes
static const std::string	_markers

static const std::string	_forces

static const std::string	_analog

Protected Member Functions
OutputTables	extendRead (const std::string &fileName) const override
	Implements reading functionality. More...

void	extendWrite (const InputTables &tables, const std::string &fileName) const override
	Implements writing functionality. More...

Additional Inherited Members
Static Protected Member Functions inherited from OpenSim::DataAdapter
static std::shared_ptr< DataAdapter >	createAdapter (const std::string &identifier)
	Creator of concrete DataAdapter(s) for the specified source type by its unique identifier (string). More...

Detailed Description

C3DFileAdapter reads a C3D file into markers and forces tables of type TimeSeriesTableVec3.

The markers table has each column labeled by its corresponding marker name. For the forces table, the data are grouped by sensor (force-plate #) in force, point and moment order, with the respective f#, p# and m# column labels. C3DFileAdpater provides options for expressing the force-plate measurements either as the net force and moments expressed at the ForcePlateOrigin, the CenterOfPressure, or the PointOfWrenchApplication.

Member Typedef Documentation

◆ EventTable

typedef std::vector<Event> OpenSim::C3DFileAdapter::EventTable

◆ Tables

typedef std::map<std::string, std::shared_ptr<TimeSeriesTableVec3> > OpenSim::C3DFileAdapter::Tables

Member Enumeration Documentation

◆ ForceLocation

enum OpenSim::C3DFileAdapter::ForceLocation

strong

Enumerated list of locations in which read in forces are expressed.

Measurement from force plates can be expressed by the C3DFileAdapter either at the OriginOfForcePlate (the default), CenterOfPressure, or the PointOfWrenchApplication. You need to call setLocationForForceExpression before invoking C3DFileAdapter::read(), otherwise the default location (OriginOfForcePlate) is assumed.

In the case of the CenterOfPressure (COP), the underlying assumptions are that the ground plane (in which COP is defined) passes through the lab origin (0,0,0) with the Z-axis as its normal vector.

The PointOfWrenchApplication (PWA) does not assume a plane of contact. The PWA is an equivalent wrench in the lab frame and computed according to Shimba 1984. Takeshi Shimba, An estimation of center of gravity from force platform data, Journal of Biomechanics, 17(1), pp53-60, 1984.

C++ example

C3DFileAdapter c3dFileAdapter;
c3dFileAdapter.setLocationForForceExpression(C3DFileAdapter::ForceLocation::CenterOfPressure);
auto tables  =  c3dFileAdapter.read("myData.c3d");
auto markersTable = c3dFileAdapter.getMarkersTable(tables);
auto forcesTable = c3dFileAdapter.getForcesTable(tables);
auto analogDataTable = c3dFileAdapter.getAnalogDataTable(tables);

Python example

import opensim
c3dFileAdapter = opensim.C3DFileAdapter()
c3dFileAdapter.setLocationForForceExpression(opensim.C3DFileAdapter.ForceLocation_CenterOfPressure);
tables = c3dFileAdapter.read("myData.c3d")
markersTable = c3dFileAdapter.getMarkersTable(tables)
forcesTable = c3dFileAdapter.getForcesTable(tables)

Java example

C3DFileAdapter c3dFileAdapter = new C3DFileAdapter();
c3dFileAdapter.setLocationForForceExpression(C3DFileAdapter.ForceLocation.CenterOfPressure);
tables = c3dFileAdapter.read("myData.c3d");
TimeSeriesTableVec3 markersTable = c3dFileAdapter.getMarkersTable(tables);
TimeSeriesTableVec3 forcesTable = c3dFileAdapter.getForcesTable(tables);

MATLAB example

c3dFileAdapter = C3DFileAdapter();
c3dFileAdapter.setLocationForForceExpression(1);
tables = c3dFileAdapter.read('myData.c3d');
markersTable = c3dFileAdapter.getMarkersTable(tables);
forcesTable = c3dFileAdapter.getForcesTable(tables);

Enumerator
OriginOfForcePlate	0 : the origin of the force-plate
CenterOfPressure	1 : the center of pressure
PointOfWrenchApplication	2 : PWA as defined by Shimba, 1984

Member Function Documentation

◆ clone()

C3DFileAdapter* OpenSim::C3DFileAdapter::clone ( ) const

overridevirtual

Implements OpenSim::DataAdapter.

◆ extendRead()

OutputTables OpenSim::C3DFileAdapter::extendRead ( const std::string & sourceName ) const

overrideprotectedvirtual

Implements reading functionality.

Implements OpenSim::DataAdapter.

◆ extendWrite()

void OpenSim::C3DFileAdapter::extendWrite	(	const InputTables &	tables,
		const std::string &	sinkName
	)		const

overrideprotectedvirtual

Implements writing functionality.

Implements OpenSim::DataAdapter.

◆ getAnalogDataTable()

std::shared_ptr<TimeSeriesTable> OpenSim::C3DFileAdapter::getAnalogDataTable ( DataAdapter::OutputTables & tables )

inline

Retrieve the TimeSeriesTable of AnalogData, typically this contains forces, moments.

◆ getForcesTable()

std::shared_ptr<TimeSeriesTableVec3> OpenSim::C3DFileAdapter::getForcesTable ( DataAdapter::OutputTables & tables )

inline

Retrieve the TimeSeriesTableVec3 of Forces.

◆ getLocationForForceExpression()

ForceLocation OpenSim::C3DFileAdapter::getLocationForForceExpression ( ) const

inline

Retrieve the option for location for force expression.

◆ getMarkersTable()

std::shared_ptr<TimeSeriesTableVec3> OpenSim::C3DFileAdapter::getMarkersTable ( DataAdapter::OutputTables & tables )

inline

Retrieve the TimeSeriesTableVec3 of Markers.

◆ setLocationForForceExpression()

void OpenSim::C3DFileAdapter::setLocationForForceExpression ( const ForceLocation location )

inline

C3DFileAdpater provides options for expressing the force-plate measurements either as the net force and moments expressed at the ForcePlateOrigin, the CenterOfPressure, or the PointOfWrenchApplication.

This function sets the option.

◆ write()

static void OpenSim::C3DFileAdapter::write	(	const Tables &	markerTable,
		const std::string &	fileName
	)

static

Member Data Documentation

◆ _analog

const std::string OpenSim::C3DFileAdapter::_analog

static

◆ _forces

const std::string OpenSim::C3DFileAdapter::_forces

static

◆ _markers

const std::string OpenSim::C3DFileAdapter::_markers

static

The documentation for this class was generated from the following file:

OpenSim/Common/C3DFileAdapter.h

Public Member Functions

Public Types

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ EventTable

◆ Tables

Member Enumeration Documentation

◆ ForceLocation

Member Function Documentation

◆ clone()

◆ extendRead()

◆ extendWrite()

◆ getAnalogDataTable()

◆ getForcesTable()

◆ getLocationForForceExpression()

◆ getMarkersTable()

◆ setLocationForForceExpression()

◆ write()

Member Data Documentation

◆ _analog

◆ _forces

◆ _markers