STOFileAdapter is a DelimFileAdapter that presets the delimiters appropriately for STO files. More...

Inheritance diagram for OpenSim::STOFileAdapter_< T >:

Public Member Functions
	STOFileAdapter_ ()

	STOFileAdapter_ (const STOFileAdapter_ &)=default

	STOFileAdapter_ (STOFileAdapter_ &&)=default

STOFileAdapter_ &	operator= (const STOFileAdapter_ &)=default

STOFileAdapter_ &	operator= (STOFileAdapter_ &&)=default

	~STOFileAdapter_ ()=default

STOFileAdapter_ *	clone () const override

Public Member Functions inherited from OpenSim::DelimFileAdapter< T >
	DelimFileAdapter ()=delete

	DelimFileAdapter (const DelimFileAdapter &)=default

	DelimFileAdapter (DelimFileAdapter &&)=default

DelimFileAdapter &	operator= (const DelimFileAdapter &)=default

DelimFileAdapter &	operator= (DelimFileAdapter &&)=default

	~DelimFileAdapter ()=default

	DelimFileAdapter (const std::string &delimitersRead, const std::string &delimterWrite)
	Create the adapter by setting the delimiters. More...

	DelimFileAdapter (const std::string &delimitersRead, const std::string &delimterWrite, const std::string &compDelimRead, const std::string &compDelimWrite)
	Create the adapter by setting the delimiters. More...

Public Member Functions inherited from OpenSim::FileAdapter
	FileAdapter ()=default

	FileAdapter (const FileAdapter &)=default

	FileAdapter (FileAdapter &&)=default

FileAdapter &	operator= (const FileAdapter &)=default

FileAdapter &	operator= (FileAdapter &&)=default

virtual	~FileAdapter ()=default

Public Member Functions inherited from OpenSim::DataAdapter
	DataAdapter ()=default

	DataAdapter (const DataAdapter &)=default

	DataAdapter (DataAdapter &&)=default

DataAdapter &	operator= (const DataAdapter &)=default

DataAdapter &	operator= (DataAdapter &&)=default

virtual	~DataAdapter ()=default

DataAdapter::OutputTables	read (const std::string &dataSourceSpecification) const
	Public interface to read data from a dataSourceSpecification, typically a file or folder. More...

const std::shared_ptr< AbstractDataTable >	getDataTable (const OutputTables &tables, const std::string tableName)
	Generic interface to retrieve a specific table by name from read result. More...

Static Public Member Functions
static void	write (const TimeSeriesTable_< T > &table, const std::string &fileName)
	Write a STO file. More...

Static Public Member Functions inherited from OpenSim::DelimFileAdapter< T >
static const std::string	tableString ()
	Key used for table associative array returned/accepted by write/read. More...

static std::string	dataTypeName ()
	Name of the data type T (template parameter). More...

Static Public Member Functions inherited from OpenSim::FileAdapter
static void	writeFile (const InputTables &tables, const std::string &fileName)
	Write a collection of tables to the given file. More...

static std::string	findExtension (const std::string &filename)
	Find the extension from a filename. More...

static std::vector< std::string >	getNextLine (std::istream &stream, const std::string &delims)
	Get the next line from the stream and tokenize/split the line using the given delimiters. More...

static std::vector< std::string >	tokenize (const std::string &str, const std::string &delims)
	Tokenize/split a given string using the given delimiters. More...

static std::shared_ptr< DataAdapter >	createAdapterFromExtension (const std::string &fileName)
	Create a concerte FileAdapter based on the extension of the passed in file and return it. More...

Static Public Member Functions inherited from OpenSim::DataAdapter
static bool	registerDataAdapter (const std::string &identifier, const DataAdapter &adapter)
	Register a concrete DataAdapter by its unique string identifier. More...

Additional Inherited Members
Public Types inherited from OpenSim::DataAdapter
typedef std::map< std::string, std::shared_ptr< DataAdapter > >	RegisteredDataAdapters
	Type of the registry containing registered adapters. More...

typedef std::map< std::string, std::shared_ptr< AbstractDataTable > >	OutputTables
	Collection of tables returned by reading methods implemented in derived classes. More...

typedef std::map< std::string, const AbstractDataTable * >	InputTables
	Collection of tables accepted by writing methods implemented in derived classes. More...

Protected Member Functions inherited from OpenSim::DelimFileAdapter< T >
OutputTables	extendRead (const std::string &filename) const override
	Implementation of the read functionality. More...

void	extendWrite (const InputTables &tables, const std::string &filename) const override
	Implementation of the write functionality. More...

SimTK::RowVector_< T >	readElems (const std::vector< std::string > &tokens) const
	Read elements of type T (template parameter) from a sequence of tokens. More...

void	writeElem (std::ostream &stream, const T &elem, const unsigned &prec) const
	Write an element of type T (template parameter) to stream with the specified precision. More...

Static Protected Member Functions inherited from OpenSim::DataAdapter
static std::shared_ptr< DataAdapter >	createAdapter (const std::string &identifier)
	Creator of concrete DataAdapter(s) for the specified source type by its unique identifier (string). More...

Detailed Description

template<typename T>
class OpenSim::STOFileAdapter_< T >

STOFileAdapter is a DelimFileAdapter that presets the delimiters appropriately for STO files.

The format of the file is as follows:

.................................
.................................
........ <metadata> .............
.................................
.................................
endheader
time colname1 colname2 ..........
.................................
.................................
............ <data-rows> ........
.................................
.................................

For example a TimeSeriesTable_<SimTK::Vec3> could look like:

units=m
DataType=Vec3
endheader
time  r_shoulder      l_shoulder      r_leg           l_leg
0.1   0.11,0.22,0.33  0.44,0.55,0.66  0.77,0.88,0.99  0.10,0.11,0.12
0.2   0.22,0.44,0.66  0.88,0.99,0.35  0.75,0.65,0.43  0.47,0.57,0.67

Columns are delimited by tab character. Elements within a column are delimited by comma character. STOFileAdapter allows reading/writing following tables:

TimeSeriesTable_<double>	DataType=double
TimeSeriesTable_<SimTK::Vec2>	DataType=Vec2
TimeSeriesTable_<SimTK::Vec3>	DataType=Vec3
TimeSeriesTable_<SimTK::Vec4>	DataType=Vec4
TimeSeriesTable_<SimTK::Vec5>	DataType=Vec5
TimeSeriesTable_<SimTK::Vec6>	DataType=Vec6
TimeSeriesTable_<SimTK::Vec7>	DataType=Vec7
TimeSeriesTable_<SimTK::Vec8>	DataType=Vec8
TimeSeriesTable_<SimTK::Vec9>	DataType=Vec9
TimeSeriesTable_<SimTK::Vec<10>>	DataType=Vec10
TimeSeriesTable_<SimTK::Vec<11>>	DataType=Vec11
TimeSeriesTable_<SimTK::Vec<12>>	DataType=Vec12
TimeSeriesTable_<SimTK::UnitVec3>	DataType=UnitVec3
TimeSeriesTable_<SimTK::Quaternion>	DataType=Quaternion
TimeSeriesTable_<SimTK::SpatialVec>	DataType=SpatialVec

Files contain metadata (in form of "DataType=<something>" as shown above) indicating the type of the table they contain.

Constructor & Destructor Documentation

◆ STOFileAdapter_() [1/3]

template<typename T >

OpenSim::STOFileAdapter_< T >::STOFileAdapter_ ( )

◆ STOFileAdapter_() [2/3]

template<typename T >

OpenSim::STOFileAdapter_< T >::STOFileAdapter_ ( const STOFileAdapter_< T > & )

default

◆ STOFileAdapter_() [3/3]

template<typename T >

OpenSim::STOFileAdapter_< T >::STOFileAdapter_ ( STOFileAdapter_< T > && )

default

◆ ~STOFileAdapter_()

template<typename T >

OpenSim::STOFileAdapter_< T >::~STOFileAdapter_ ( )

default

Member Function Documentation

◆ clone()

template<typename T >

STOFileAdapter_< T > * OpenSim::STOFileAdapter_< T >::clone ( ) const

overridevirtual

Reimplemented from OpenSim::DelimFileAdapter< T >.

◆ operator=() [1/2]

template<typename T >

STOFileAdapter_& OpenSim::STOFileAdapter_< T >::operator= ( const STOFileAdapter_< T > & )

default

◆ operator=() [2/2]

template<typename T >

STOFileAdapter_& OpenSim::STOFileAdapter_< T >::operator= ( STOFileAdapter_< T > && )

default

◆ write()

template<typename T >

void OpenSim::STOFileAdapter_< T >::write	(	const TimeSeriesTable_< T > &	table,
		const std::string &	fileName
	)

static

Write a STO file.

Examples:: example2DWalking.cpp, exampleHangingMuscle.cpp, exampleMocoInverse.cpp, and exampleMocoTrack.cpp.

References OpenSim::DelimFileAdapter< T >::extendWrite().

The documentation for this class was generated from the following file:

OpenSim/Common/STOFileAdapter.h

Public Member Functions

Static Public Member Functions

Additional Inherited Members

Detailed Description

template<typename T> class OpenSim::STOFileAdapter_< T >

Constructor & Destructor Documentation

◆ STOFileAdapter_() [1/3]

◆ STOFileAdapter_() [2/3]

◆ STOFileAdapter_() [3/3]

◆ ~STOFileAdapter_()

Member Function Documentation

◆ clone()

◆ operator=() [1/2]

◆ operator=() [2/2]

◆ write()

template<typename T>
class OpenSim::STOFileAdapter_< T >