addAtom(const PdbAtom &atom) | PdbResidue | |
getAtom(String argName) const | PdbResidue | |
getAtom(Pdb::AtomIndex atomIx) const | PdbResidue | [inline] |
getInsertionCode() const | PdbResidue | [inline] |
getName() const | PdbResidue | [inline] |
getNumAtoms() const | PdbResidue | [inline] |
getPdbResidueNumber() const | PdbResidue | [inline] |
getResidueId() const | PdbResidue | [inline] |
hasAtom(SimTK::String argName) const | PdbResidue | |
parsePdbLine(const String &line) | PdbResidue | [protected] |
PdbChain class | PdbResidue | [friend] |
PdbResidue(String name, PdbResidueId id) | PdbResidue | [explicit] |
PdbResidue(const class Compound &compound, int residueNumber, const Transform &transform=Transform()) | PdbResidue | [explicit] |
PdbResidue(const State &state, const class Compound &compound, int residueNumber, const Transform &transform=Transform()) | PdbResidue | [explicit] |
updAtom(String argName) | PdbResidue | |
write(std::ostream &os, int &nextAtomSerialNumber, char chainId, const Transform &transform) const | PdbResidue |