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| Please use this list as a guideline while you are reviewing an article. While this list is comprehensive, not all items need to be filled in. This is simply a set of recommendations with the potential to establish a standardized and objective review process. |
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| * ''Model Name, Key words (generic and specific).'' | * ''Model name, keywords (generic and specific).'' |
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| * ''Simulation Software.'' * ''Brief one or two line description.'' * ''Detailed description, diagrams, equations.'' * ''Reference to Publication describing the model.'' * ''Pointer to the publication or pdf.'' * ''Related Models, antecedents, comparables, and successors.'' |
* ''Simulation software.'' * ''Brief description.'' * ''Summary of highlights.'' * ''Summary of limitations.'' * ''Reference to publication.'' * ''Pointer to the publication.'' * ''Related models.'' |
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| * ''Domain definition (cells, mito, tissues, organ system, organism).'' * ''Main variables (chemicals, pressures, etc.), with units.'' * ''Parameters, with units, and with source references.'' * ''Descriptions and references for subsidiary models.'' * ''Source Code: Clear, deeply commented, explained, referenced.'' * ''Inputs and outputs defined. All nodes and edges defined.'' * ''Define linkage type (Chemical, electrical, mechanical,etc.).'' * ''Ontology base for notation.'' * ''Numerical solvers used, and conditions set.'' * ''List of Modeling Assumptions.'' * ''Subcomponents.'' * ''Formulation.'' * ''Solution Strategy.'' |
* ''Physics and domains.'' e.g. static, dynamics, elastics, biphasic, joint, tissue, cell * ''List of overall modeling assumptions.'' * ''Loading and boundary conditions.'' scenario, origin. * ''Primary output variables.'' * ''Secondary output variables.'' * ''Components (subsidiary models).'' * ''Geometric representation.'' Origin of data, segmentation procedures. * ''Mesh.'' Mesh generation protocols, characteristics. * ''Material properties.'' Constitutive models, origin of parameters. * Interactions. * ''Components.'' * ''Interaction properties.'' Models to represent interactions, origin of parameters. * ''Solution strategy.'' * ''Simulation settings.'' Numerical solvers used, stopping tolerances, etc. |
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| * ''Unitary Balance: (units on all variables and parameters).'' * ''Mass balance: (list constituents whose conservation is checked).'' * ''Charge balance: (ion currents, membrane potential).'' * ''Osmotic balance: (volume, total activities, fluxes).'' * ''Thermodynamic Balance (Haldane constraints on reactions).'' |
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| * '' Methods for verification defined. Reference model solution?.'' * ''Attempt to Verify Simulation Software.'' * ''Mesh Convergence.'' |
* ''Methods for verification defined. Reference model solution?.'' * ''Attempt to verify simulation software.'' * ''Mesh convergence.'' |
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| * ''Procedure Validation with Simplified Representative Problem.'' * ''Sensitivity Analysis.'' |
* ''Procedure validation with Simplified Representative Problem.'' * ''Sensitivity analysis.'' |
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| * ''Source code.'' * ''Ontology base for notation.'' |
This page contains a literature review of currently available knee models based on finite element analysis. The [http://www.imagwiki.org/mediawiki/index.php?title=Working_Group_10#Standards_Proposal Standards proposal], developed by [http://www.imagwiki.org/mediawiki/index.php?title=Working_Group_10 Working Group 10 - Model Sharing and Standards] of [http://www.imagwiki.org/mediawiki/index.php?title=Main_Page Interagency Modeling and Analysis Group] is specialized for knee modeling, as a guideline for the review process.
Review Guidelines
Please use this list as a guideline while you are reviewing an article. While this list is comprehensive, not all items need to be filled in. This is simply a set of recommendations with the potential to establish a standardized and objective review process.
Identification & Description
Model name, keywords (generic and specific).
Version.
Simulation software.
Brief description.
Summary of highlights.
Summary of limitations.
Reference to publication.
Pointer to the publication.
Related models.
Model Structure & Content
Physics and domains. e.g. static, dynamics, elastics, biphasic, joint, tissue, cell
List of overall modeling assumptions.
Loading and boundary conditions. scenario, origin.
Primary output variables.
Secondary output variables.
Components (subsidiary models).
Geometric representation. Origin of data, segmentation procedures.
Mesh. Mesh generation protocols, characteristics.
Material properties. Constitutive models, origin of parameters.
- Interactions.
Components.
Interaction properties. Models to represent interactions, origin of parameters.
Solution strategy.
Simulation settings. Numerical solvers used, stopping tolerances, etc.
Verification
All equations correct, units balance, with all terms defined.
Numerical solutions checked against analytical solutions.
Running code supplied in a common format.
Solutions show little dependence on time or space step size.
Methods for verification defined. Reference model solution?.
Attempt to verify simulation software.
Mesh convergence.
Validation
Initial and boundary conditions in accord with physiology.
Data provided, and fitted by model.
Model is predictive, shown to fit other data not used as basis.
Parameters justified (sources provided) and evaluated.
Availability of Direct Validation.
Availability of Indirect Validation.
Comparison with Experimental Data.
Comparison with Literature.
Procedure validation with Simplified Representative Problem.
Sensitivity analysis.
Availability
Website source from which to download model code and data.
Website or email or address to accept queries.
Website for public commentary and responses.
References to subsequent publications or alternative models.
Online Rating System.
Licensing.
Source code.
Ontology base for notation.
Studies on FEA of the Knee
Open Knee
The finite element representation used in the Open Knee projects is reviewed in here as an example. This will also serve an ongoing assessment of the scholarly status of the knee model under development.