Size: 3688
Comment:
|
← Revision 54 as of 2020-06-18 13:59:53 ⇥
Size: 7419
Comment:
|
Deletions are marked like this. | Additions are marked like this. |
Line 5: | Line 5: |
[[Navigation(children)]] | <<Navigation(children)>> |
Line 7: | Line 7: |
[[BR]][[BR]][[BR]][[BR]] | <<BR>><<BR>><<BR>><<BR>> |
Line 9: | Line 9: |
[[TableOfContents()]] | <<TableOfContents>> Open Knee(s) targets for development of knee models with a predictive capacity for joint mechanics and tissue mechanics. Finite element analysis is the simulation tool of choice as it has the premise to provide detailed quantification of knee biomechanics. Detailed specifications for required experimentation and modeling & simulation steps are provided in through the links below. Modeling & simulation within the Open Knee(s) project relies on: * a general purpose workflow summarized in https://simtk.org/websvn/wsvn/openknee/doc/FEA-workflow.pdf * a description of the components of a finite element analysis study provided in https://simtk.org/websvn/wsvn/openknee/doc/msm_2015.pdf |
Line 13: | Line 20: |
[[PageList(Specifications)]] | 1. [[Specifications/Specimens|Specimens]] 1. [[Specifications/SpecimenPreparation|Specimen Preparation]] 1. [[Specifications/DataManagement|Data Management]] 1. [[Specifications/ExperimentationAnatomicalImaging|Experimentation Anatomical Imaging]] 1. [[Specifications/MRIScoring|MRI Scoring]] 1. [[Specifications/ExperimentationJointMechanics|Experimentation Joint Mechanics]] 1. [[Specifications/PressureCalibration|Pressure Calibration]] 1. [[Specifications/ExperimentationTissueMechanics|Experimentation Tissue Mechanics]] 1. [[Specifications/ExperimentationTissueThickness|Experimentation Tissue Thickness]] 1. [[Specifications/Registration|Registration]] 1. [[Specifications/ImageSegmentation|Image Segmentation]] 1. [[Specifications/GeometryGeneration|Geometry Generation]] 1. [[Specifications/MeshGeneration|Mesh Generation]] 1. [[Specifications/TemplateModelGeneration|Template Model Generation]] 1. [[Specifications/ModelCustomization|Model Customization]] 1. [[Specifications/ModelingConstitutive|Modeling Constitutive]] 1. [[Specifications/ModelingTissue|Modeling Tissue]] 1. [[Specifications/SimulationTissue|Simulation Tissue]] 1. [[Specifications/CloudComputingPrototype|Cloud Computing Prototype]] 1. [[Specifications/FebioFeatures|FEBio Features]] 1. [[Specifications/ModelingModelGraph|Modeling Model Graph]] 1. [[Specifications/ModelingAssembly|Modeling Assembly]] 1. [[Specifications/ModelingCompartmental|Modeling Compartmental]] 1. [[Specifications/SimulationCompartmental|Simulation Compartmental]] 1. [[Specifications/ModelingKinematicsKinetics|Modeling Kinematics Kinetics]] 1. [[Specifications/ModelingJoint|Modeling Joint]] 1. [[Specifications/SimulationJoint|Simulation Joint]] 1. [[Specifications/PressureAnalysis|Pressure Analysis]] 1. [[Specifications/ModelTroubleshooting|Model Troubleshooting]] 1. [[Specifications/TipsAndTricks|Tips And Tricks]] |
Line 17: | Line 55: |
[[ImageLink(https://simtk.org/svn/openknee/doc/img/Experimentation_Workflow.png, width=600, alt=Experimentation Workflow)]] | [[https://simtk.org/svn/openknee/doc/img/Experimentation_Workflow.png|{{https://simtk.org/svn/openknee/doc/img/Experimentation_Workflow.png|Experimentation Workflow|width=600}}]] |
Line 21: | Line 59: |
1. ["Specifications/Specimens"] 1. ["Specifications/SpecimenPreparation"] |
1. [[Specifications/Specimens|Specimens]] 1. [[Specifications/SpecimenPreparation|Specimen Preparation]] |
Line 29: | Line 67: |
. ["Specifications/DataManagement"] 1. ["Specifications/ExperimentationAnatomicalImaging"] |
. [[Specifications/DataManagement|Data Management]] 1. [[Specifications/ExperimentationAnatomicalImaging|Experimentation Anatomical Imaging]] |
Line 33: | Line 71: |
. ["Specifications/DataManagement"] 1. ["Specifications/ExperimentationJointMechanics"] |
. [[Specifications/DataManagement|Data Management]] . [[Specifications/MRIScoring|MRI Scoring]] 1. [[Specifications/ExperimentationJointMechanics|Experimentation Joint Mechanics]] |
Line 37: | Line 76: |
. ["Specifications/DataManagement"] . ["Specifications/PressureCalibration"] 1. ["Specifications/ExperimentationTissueMechanics"] |
. [[Specifications/DataManagement|Data Management]] . [[Specifications/PressureCalibration|Pressure Calibration]] 1. [[Specifications/ExperimentationTissueMechanics|Experimentation Tissue Mechanics]] |
Line 42: | Line 81: |
. ["Specifications/DataManagement"] . ["Specifications/ExperimentationTissueThickness"] 1. ["Specifications/Registration"] |
. [[Specifications/DataManagement|Data Management]] . [[Specifications/ExperimentationTissueThickness|Experimentation Tissue Thickness]] 1. [[Specifications/Registration|Registration]] |
Line 49: | Line 88: |
[[ImageLink(https://simtk.org/svn/openknee/doc/img/modeling_workflow.png, width=800, alt=Modeling & Simulation Workflow)]] | [[https://simtk.org/svn/openknee/doc/img/modeling_workflow.png|{{https://simtk.org/svn/openknee/doc/img/modeling_workflow.png|Modeling & Simulation Workflow|width=800}}]] |
Line 54: | Line 93: |
1. ["Specifications/ExperimentationAnatomicalImaging"] 1. ["Specifications/ExperimentationTissueMechanics"] 1. ["Specifications/ExperimentationJointMechanics"] 1. ["Specifications/ImageSegmentation"] 1. ["Specifications/GeometryGeneration"] 1. ["Specifications/MeshGeneration"] 1. ["Specifications/ModelingConstitutive"] 1. ["Specifications/ModelingTissue"] 1. ["Specifications/SimulationTissue"] |
1. [[Specifications/ExperimentationAnatomicalImaging|Experimentation Anatomical Imaging]] 1. [[Specifications/ExperimentationTissueMechanics|Experimentation Tissue Mechanics]] 1. [[Specifications/ExperimentationJointMechanics|Experimentation Joint Mechanics]] 1. [[Specifications/ImageSegmentation|Image Segmentation]] 1. [[Specifications/GeometryGeneration|Geometry Generation]] 1. [[Specifications/MeshGeneration|Mesh Generation]] 1. [[Specifications/ModelingConstitutive|Modeling Constitutive]] 1. [[Specifications/ModelingTissue|Modeling Tissue]] 1. [[Specifications/SimulationTissue|Simulation Tissue]] |
Line 65: | Line 104: |
. ["Specifications/CloudComputingPrototype"] . ["Specifications/FebioFeatures"] 1. ["Specifications/MeshAssembly"] |
. [[Specifications/CloudComputingPrototype|Cloud Computing Prototype]] . [[Specifications/FebioFeatures|FeBio Features]] 1. [[Specifications/MeshAssembly|Mesh Assembly]] |
Line 69: | Line 108: |
. ["Specifications/ModelingModelGraph"] 1. ["Specifications/ModelingAssembly"] |
. [[Specifications/ModelingModelGraph|Modeling Model Graph]] 1. [[Specifications/ModelingAssembly|Modeling Assembly]] |
Line 72: | Line 111: |
. ["Specifications/ModelingModelGraph"] 1. ["Specifications/ModelingCompartmental"] 1. ["Specifications/SimulationCompartmental"] |
. [[Specifications/ModelingModelGraph|Modeling Model Graph]] 1. [[Specifications/ModelingCompartmental|Modeling Compartmental]] 1. [[Specifications/SimulationCompartmental|Simulation Compartmental]] |
Line 77: | Line 116: |
. ["Specifications/CloudComputingPrototype"] . ["Specifications/FebioFeatures"] 1. ["Specifications/ModelingJoint"] 1. ["Specifications/SimulationJoint"] |
. [[Specifications/ModelingKinematicsKinetics|Modeling Kinematics Kinetics]] . [[Specifications/CloudComputingPrototype|Cloud Computing Prototype]] . [[Specifications/FebioFeatures|FeBio Features]] 1. [[Specifications/ModelingJoint|Modeling Joint]] 1. [[Specifications/SimulationJoint|Simulation Joint]] |
Line 83: | Line 123: |
. ["Specifications/CloudComputingPrototype"] . ["Specifications/FebioFeatures"] |
. [[Specifications/ModelingKinematicsKinetics|Modeling Kinematics Kinetics]] . [[Specifications/PressureAnalysis|Pressure Analysis]] . [[Specifications/CloudComputingPrototype|Cloud Computing Prototype]] . [[Specifications/FebioFeatures|FeBio Features]] |
Open Knee(s) targets for development of knee models with a predictive capacity for joint mechanics and tissue mechanics. Finite element analysis is the simulation tool of choice as it has the premise to provide detailed quantification of knee biomechanics. Detailed specifications for required experimentation and modeling & simulation steps are provided in through the links below.
Modeling & simulation within the Open Knee(s) project relies on:
a general purpose workflow summarized in https://simtk.org/websvn/wsvn/openknee/doc/FEA-workflow.pdf
a description of the components of a finite element analysis study provided in https://simtk.org/websvn/wsvn/openknee/doc/msm_2015.pdf
All Specifications Pages
Experimentation Workflow
The following relates the above flowchart to the corresponding specification page(s). Note the step numbers in the flowchart correspond to the specification pages below. Both this list and the flowchart should be updated if the workflow changes. Pages for specific information on each step of the experimentation process are:
- Initial preparation
- Preparation for registration
- Preparation for anatomical imaging
- Preparation for joint testing
- Preparation for tissue testing
- Supporting Specifications:
Experimentation Anatomical Imaging
- Output: magnetic resonance images for specimen-specific anatomical reconstruction
- Supporting Specifications:
Experimentation Joint Mechanics
- Output: in vitro joint mechanics (kinematics-kinetics response)
- Supporting Specifications:
Experimentation Tissue Mechanics
- Output: in vitro tissue mechanics (stress-strain response)
- Supporting Specifications:
- Output: coordinate system transformations (between imaging and experimentation systems)
Modeling & Simulation Workflow
The following list relates the modeling and simulation flowchart above to the corresponding specification pages. Both the list and the flowchart should be updated if the workflow changes. The step numbers in the flowchart correspond to the specification pages as listed:
- Prerequisite experimentation
- Output: specimen specific predictions of tissue mechanics
- Supporting Specifications:
- Supporting Specifications:
- Supporting Specifications:
- Output: specimen specific predictions of compartmental mechanics
- Supporting Specifications:
- Output: specimen specific predictions of joint mechanics
- Supporting Specifications: