Muscles contraction without their activation

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Giuseppe Scaccuto
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Muscles contraction without their activation

Post by Giuseppe Scaccuto » Fri Feb 22, 2019 8:57 am

Dear all,
I'm using an upper limb .osim model with 6 millard muscles and 2 DoF.

I'm using a modified version of the MoBL upper limb model with only the following muscles: DELT3, PECM1, TRIlong, TRIlat, BICshort, BRA.

Muscle parameters are taken from the original paper of the model: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4282829/

The unique parameter I changed is the contraction velocity that I set equal to 10.

I'm using the OpenSim-MATLAB interface to create a forward simulation in Simulink for setting muscle excitations and retrieving some output information: https://simtk.org/projects/opensimmatlab

I have run a simulation during which the activation send to the six muscles were equal to 0, i.e. the minimum allowable value. I would expect that model didn't perform any movements holding his initial position, instead it shows a drift in one direction. Here attached a video that shows this effect and the .osim file.

Can you explain me what is the problem and how to solve it.
Attachments
media.io_b8a279baf7fe7b8a1cc18547736cec75.zip
(740.1 KiB) Downloaded 10 times
Arm6.osim
(116.21 KiB) Downloaded 60 times

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Thomas Uchida
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Re: Muscles contraction without their activation

Post by Thomas Uchida » Fri Feb 22, 2019 11:27 am

Gravity and/or passive muscle forces?

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Giuseppe Scaccuto
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Re: Muscles contraction without their activation

Post by Giuseppe Scaccuto » Sat Feb 23, 2019 7:55 am

tkuchida wrote:
Fri Feb 22, 2019 11:27 am
Gravity and/or passive muscle forces?
Gravity was setted to 0.

Here's passive forces.

passive forces.png
passive forces.png (16.83 KiB) Viewed 687 times

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Thomas Uchida
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Re: Muscles contraction without their activation

Post by Thomas Uchida » Sat Feb 23, 2019 9:19 pm

I loaded the model you provided in your first post but received "Object type Millard12EqMuscleWithAfferents not recognized" errors so I was unable to reproduce the issue to investigate. However, I loaded the arm26 model that accompanies the 4.0 installation and confirmed that no active muscle forces are produced when activations are zero. You could try verifying that your MATLAB code is, indeed, setting activations to zero, and perhaps try using a MuscleAnalysis to investigate which forces are being generated.

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Giuseppe Scaccuto
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Re: Muscles contraction without their activation

Post by Giuseppe Scaccuto » Sun Feb 24, 2019 9:27 am

tkuchida wrote:
Sat Feb 23, 2019 9:19 pm
I loaded the model you provided in your first post but received "Object type Millard12EqMuscleWithAfferents not recognized" errors so I was unable to reproduce the issue to investigate. However, I loaded the arm26 model that accompanies the 4.0 installation and confirmed that no active muscle forces are produced when activations are zero. You could try verifying that your MATLAB code is, indeed, setting activations to zero, and perhaps try using a MuscleAnalysis to investigate which forces are being generated.
I'm sorry. I forgot to send the plugin I compiled. Here it to test my model.

osimAfferentsPlugin.rar
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Antonio Parziale
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Re: Muscles contraction without their activation

Post by Antonio Parziale » Sun Feb 24, 2019 9:48 am

tkuchida wrote:
Sat Feb 23, 2019 9:19 pm
I loaded the model you provided in your first post but received "Object type Millard12EqMuscleWithAfferents not recognized" errors so I was unable to reproduce the issue to investigate. However, I loaded the arm26 model that accompanies the 4.0 installation and confirmed that no active muscle forces are produced when activations are zero. You could try verifying that your MATLAB code is, indeed, setting activations to zero, and perhaps try using a MuscleAnalysis to investigate which forces are being generated.
Dear Dr. Uchida,

It would be great if you can check the model with the plugin attached by Giuseppe. We would be more comfortable with a your comment. Millard12EqMuscleWithAfferents is the standard Millard muscle that includes the spindles and golgi models. The muscle's equations are not changed.
We are really thankful to you.

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Thomas Uchida
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Re: Muscles contraction without their activation

Post by Thomas Uchida » Mon Feb 25, 2019 2:55 pm

I loaded the plugin, opened the model, and attempted to run a 0.1-second simulation, but the integrator did not seem to be progressing. Please provide instructions for how to reproduce the issue. I suspect there may be an issue in the plugin, which cannot be diagnosed without looking at the code.

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Giuseppe Scaccuto
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Re: Muscles contraction without their activation

Post by Giuseppe Scaccuto » Tue Feb 26, 2019 4:33 am

tkuchida wrote:
Mon Feb 25, 2019 2:55 pm
I loaded the plugin, opened the model, and attempted to run a 0.1-second simulation, but the integrator did not seem to be progressing. Please provide instructions for how to reproduce the issue. I suspect there may be an issue in the plugin, which cannot be diagnosed without looking at the code.
Thanks for your support.

Integration with that plugin is very slow but it progresses after few mins (I think because It has many state variables to compute). If you reduce "integrator error tolerance" to 0.01 the simulation is faster.

However, I also tried a simulation with default integrator error tolerance and without activation on the same model and using the classic millard's muscle and I have the same issue on it.

Here there is the model with classic millard's muscle. Can you please evaluate this one? Thank you a lot for all.

Arm6_millard.osim
(112.44 KiB) Downloaded 79 times

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Thomas Uchida
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Re: Muscles contraction without their activation

Post by Thomas Uchida » Tue Feb 26, 2019 12:35 pm

I ran a 0.5-second simulation and then used the Analyze Tool to run a MuscleAnalysis. The passive forces are large.

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Antonio Parziale
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Re: Muscles contraction without their activation

Post by Antonio Parziale » Tue Feb 26, 2019 3:45 pm

tkuchida wrote:
Tue Feb 26, 2019 12:35 pm
I ran a 0.5-second simulation and then used the Analyze Tool to run a MuscleAnalysis. The passive forces are large.
Dear Dr. Uchida,

We apologise for the inconvenient. We were using in the wrong way the Plot tool offered by OpenSim. So, it seems the passive forces shown by Giuseppe in his first thread are not the right ones.
Following your suggestions:
1) we chose "Tools> Forward Dynamics"
2) Time from 0 to 0.5 and we clicked on RUN. "Results" appears in Motion
3) Tools> Muscle Analysis. Loaded Motion is set to Results. "States" appears in Motion
4) Tools > Plot is used for plotting the passive fiber-force as function of Results of States.

We notice a difference between the two plots. The fiber-force vs Results shows a spike while the fiber-force vs States shows a big value along all the simulation. Why are they different? I have attached them here.

Furthermore, how can we solve this problem? I read many posts about muscle parameters but I'm not so confident with it.
By Reading the file "TipForDubbuingMuscleActuateSImulations" I understood that i have to modify tendon slack length in order to move "normalized fiber length" towards the optimal fiber length. Is it right?
Or can you suggest me another strategy?

Thank you again for all
Attachments
pec1_states.png
pec1_states.png (12.87 KiB) Viewed 557 times
pec1_results.png
pec1_results.png (12.6 KiB) Viewed 557 times

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