Serialized Form

Package org.simtk.file

Class org.simtk.file.CopyDirectoryChooser extends javax.swing.JFileChooser implements Serializable

Serialized Fields

overwritePolicy

org.simtk.file.CopyDirectoryChooser.OverwritePolicy overwritePolicy

isCanceled

boolean isCanceled

errorDialogOptions

java.lang.String[] errorDialogOptions

Package org.simtk.isimsu

Class org.simtk.isimsu.IonCountDialog extends javax.swing.JDialog implements Serializable

serialVersionUID: 2L

Serialized Fields

ionTable

javax.swing.JTable ionTable

dismissButton

javax.swing.JButton dismissButton

saveResultsButton

javax.swing.JButton saveResultsButton

showDetailsButton

javax.swing.JButton showDetailsButton

pymolButton

javax.swing.JButton pymolButton

tableColumnToolTips

java.util.Map<K,V> tableColumnToolTips

isimWrapper

ISIMWrapper isimWrapper

tablePanel

javax.swing.JPanel tablePanel

yourMoleculeLabel

javax.swing.JLabel yourMoleculeLabel

moleculeChargeLabel

javax.swing.JLabel moleculeChargeLabel

totalChargeLabel

javax.swing.JLabel totalChargeLabel

Class org.simtk.isimsu.IonSelectionDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

programName

java.lang.String programName

addIonButton

javax.swing.JButton addIonButton

finishedButton

javax.swing.JButton finishedButton

cancelButton

javax.swing.JButton cancelButton

helpButton

javax.swing.JButton helpButton

ionPanelList

java.util.Collection<E> ionPanelList

ionsPanel

javax.swing.JPanel ionsPanel

ionConditionSet

SaltRangeSet ionConditionSet

netChargeLabel

javax.swing.JLabel netChargeLabel

saltSelectionObservable

SaltSelectionObservableClass saltSelectionObservable

ionRangeMap

java.util.Map<K,V> ionRangeMap

rangeIonMap

java.util.Map<K,V> rangeIonMap

Class org.simtk.isimsu.ISIMWrapper extends javax.swing.JFrame implements Serializable

Serialized Fields

ionDialog

IonSelectionDialog ionDialog

isimParameterDialog

org.simtk.isimsu.IsimParameterDialog isimParameterDialog

workIsSaved

boolean workIsSaved

programName

java.lang.String programName

interfaceName

java.lang.String interfaceName

loadMoleculeAction

org.simtk.isimsu.LoadMoleculeAction loadMoleculeAction

apbsParameters

org.simtk.isimsu.APBSParameters apbsParameters

isimParameters

org.simtk.isimsu.ISIMParameters isimParameters

parentWorkingDirectory

java.io.File parentWorkingDirectory

programDirectory

java.io.File programDirectory

workingDirectory

java.io.File workingDirectory

isTestRun

int isTestRun

availableIonConditionRanges

SaltRangeSet availableIonConditionRanges

logDialog

LogDialog logDialog

isimIcon

java.awt.Image isimIcon

loadMacromoleculeTask

ISIMTask loadMacromoleculeTask

loadIonTask

ISIMTask loadIonTask

adjustAPBSParametersTask

ISIMTask adjustAPBSParametersTask

computeCombinedPotentialTask

ISIMTask computeCombinedPotentialTask

setIsimParameterTask

ISIMTask setIsimParameterTask

apbsAndIsimTask

ISIMTask apbsAndIsimTask

viewIonCountsTask

ISIMTask viewIonCountsTask

chooseMoleculeRow

org.simtk.isimsu.ISIMStepRow chooseMoleculeRow

apbsSimulateRow

org.simtk.isimsu.ISIMStepRow apbsSimulateRow

isimCombinedRow

org.simtk.isimsu.ISIMStepRow isimCombinedRow

viewIonCountsRow

org.simtk.isimsu.ISIMStepRow viewIonCountsRow

isimSimulateRow

org.simtk.isimsu.ISIMStepRowWithProgressFile isimSimulateRow

errorMessage

java.lang.String errorMessage

moleculeAcquisitionMethodDialog

org.simtk.pdb.MoleculeAcquisitionMethodDialog moleculeAcquisitionMethodDialog

Class org.simtk.isimsu.LogDialog extends javax.swing.JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

logTextArea

javax.swing.JTextArea logTextArea

printToOutFile

boolean printToOutFile

startTime

java.util.Date startTime

Class org.simtk.isimsu.SaltCondition extends java.util.Vector<IonConcentration> implements Serializable

Serialized Fields

parent

SaltConditionRange parent

conditionName

java.lang.String conditionName

Class org.simtk.isimsu.SaltConditionRange extends java.util.Vector<SaltCondition> implements Serializable

Serialized Fields

temperature

float temperature

solventPermittivity

float solventPermittivity

surfaceModel

org.simtk.isimsu.IonSpecies.IonSurfaceModel surfaceModel

ionSpecies

java.util.Set<E> ionSpecies

Class org.simtk.isimsu.SaltRangeSet extends java.util.Vector<SaltConditionRange> implements Serializable

Class org.simtk.isimsu.SaltSelectionEvent extends java.util.EventObject implements Serializable

Serialized Fields

saltCondition

SaltCondition saltCondition

Class org.simtk.isimsu.SimulationDetailsDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

dismissButton

javax.swing.JButton dismissButton

isimWrapper

ISIMWrapper isimWrapper

Package org.simtk.splashscreen

Class org.simtk.splashscreen.SplashWindow extends java.awt.Window implements Serializable

Serialized Fields

paintCalled

boolean paintCalled